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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C2L001913 through 18771 annotations produced 1 hits



(CG33681):

Annotation Number : S.C2L001913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053681
Gbrowse : chr2L:14004770-14013644 (+) // 100.0 //
Probeset : 1627921_at
Accessions : protein= NP_001027264;, nucleotide= NM_001032093;
FlyMine data for FBgn0053681.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.60None
Head6 20 of 4 0.60None
Eye3 00 of 4 0.38Down
Thoracicoabdominal ganglion6 20 of 4 0.60None
Salivary gland15 31 of 4 1.49None
Crop13 10 of 4 1.30None
Midgut16 11 of 4 1.50None
Tubule11 00 of 4 1.00None
Hindgut12 10 of 4 1.10None
Heart7 01 of 4 0.71None
Fat body17 13 of 4 1.66Up
Ovary5 00 of 4 0.50Down
Testis2 10 of 4 0.20Down
Male accessory glands14 10 of 4 1.40None
Virgin spermatheca8 30 of 4 0.77None
Mated spermatheca11 10 of 4 1.07None
Adult carcass11 00 of 4 1.10None
Larval CNS7 10 of 4 0.71None
Larval Salivary gland16 20 of 4 1.54None
Larval midgut10 20 of 4 1.00None
Larval tubule15 10 of 4 1.50Up
Larval hindgut5 00 of 4 0.54Down
Larval fat body10 11 of 4 1.00None
Larval trachea8 21 of 4 0.80None
Larval carcass12 11 of 4 1.22None
S2 cells (growing)11 01 of 4 1.06None
Whole fly10 11 of 4

Looking for S.C2L001913. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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