FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C2R000053 through 18771 annotations produced 1 hits

dpr12 (dpr12):

Annotation Number : S.C2R000053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085414
Gbrowse : chr2R:1743127-1743776 (+) // 100.0 //
Probeset : 1628940_at
Accessions : protein= NP_652462;, nucleotide= NM_144205;
FlyMine data for FBgn0085414.
TRiP has 1 RNAi stocks for FBgn0085414 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085414 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	0 of 4	5.20	None
Head	2 ± 0	0 of 4	0.90	None
Eye	1 ± 0	0 of 4	0.58	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.20	None
Salivary gland	4 ± 0	0 of 4	2.14	None
Crop	2 ± 0	0 of 4	1.00	None
Midgut	2 ± 0	0 of 4	1.20	None
Tubule	1 ± 0	0 of 4	0.50	Down
Hindgut	2 ± 0	0 of 4	1.20	None
Heart	3 ± 0	0 of 4	1.67	None
Fat body	5 ± 2	0 of 4	2.43	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	0 ± 0	0 of 4	0.40	None
Male accessory glands	1 ± 0	0 of 4	0.60	None
Virgin spermatheca	1 ± 0	0 of 4	0.66	None
Mated spermatheca	1 ± 0	0 of 4	0.81	None
Adult carcass	3 ± 0	0 of 4	1.40	None
Larval CNS	1 ± 0	0 of 4	0.49	None
Larval Salivary gland	1 ± 0	0 of 4	0.53	None
Larval midgut	1 ± 0	0 of 4	0.78	None
Larval tubule	1 ± 0	0 of 4	0.60	None
Larval hindgut	1 ± 0	0 of 4	0.72	None
Larval fat body	6 ± 2	0 of 4	2.70	None
Larval trachea	2 ± 2	0 of 4	1.16	None
Larval carcass	1 ± 0	0 of 4	0.82	None
S2 cells (growing)	1 ± 0	0 of 4	0.66	None
Whole fly	2 ± 1	0 of 4

Looking for S.C2R000053. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720