FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C2R000098 through 18771 annotations produced 1 hits

():

Annotation Number : S.C2R000098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrUextra:5025869-5575359 (+) // 96.0 // /// chrUextra:2575332-2872854 (+) // 92.67 // /// chrUextra:11855931-12455202 (+) // 94.0 // /// chrU:8877013-8940905 (+) // 93.67 // /// chrU:6845894-7025119 (+) // 91.67 // /// chrU:6317812-6741964 (+) // 92.0 // /// chrU:565896-571363 (+) // 91.0 // /// chrUextra:11046714-11560077 (-) // 92.33 // /// chr2R:2184189-2186966 (-) // 100.0 // /// chrU:1210277-1213055 (-) // 99.33 // /// chrU:293444-296252 (-) // 99.0 //
Probeset : 1640292_at
Accessions : protein= , nucleotide=

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	3.30	Up
Head	3 ± 2	1 of 4	2.80	None
Eye	3 ± 0	0 of 4	2.53	Up
Thoracicoabdominal ganglion	7 ± 3	0 of 4	5.80	None
Salivary gland	14 ± 4	1 of 4	10.77	None
Crop	6 ± 1	1 of 4	4.50	None
Midgut	3 ± 1	0 of 4	2.60	None
Tubule	4 ± 0	0 of 4	3.40	Up
Hindgut	2 ± 0	0 of 4	1.80	None
Heart	3 ± 0	0 of 4	2.53	Up
Fat body	5 ± 4	1 of 4	4.21	None
Ovary	1 ± 0	0 of 4	1.40	None
Testis	4 ± 1	3 of 4	3.00	None
Male accessory glands	4 ± 1	0 of 4	3.20	None
Virgin spermatheca	2 ± 1	0 of 4	1.57	None
Mated spermatheca	4 ± 1	0 of 4	3.04	None
Adult carcass	7 ± 4	1 of 4	5.40	None
Larval CNS	6 ± 1	2 of 4	5.13	Up
Larval Salivary gland	6 ± 2	0 of 4	5.11	None
Larval midgut	5 ± 1	1 of 4	3.83	Up
Larval tubule	3 ± 0	0 of 4	2.60	Up
Larval hindgut	2 ± 0	0 of 4	1.92	None
Larval fat body	3 ± 1	0 of 4	2.60	None
Larval trachea	3 ± 2	0 of 4	2.53	None
Larval carcass	3 ± 1	0 of 4	2.68	None
S2 cells (growing)	5 ± 0	2 of 4	4.04	Up
Whole fly	1 ± 0	0 of 4

Looking for S.C2R000098. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720