FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C2R000283 through 18771 annotations produced 1 hits

Dcarmil (CG1399):

Annotation Number : S.C2R000283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033212
Gbrowse : chr2R:3575700-3582699 (-) // 98.55 //
Probeset : 1626672_at
Accessions : protein= NP_001163075; /// NP_001163076; /// NP_001163077; /// NP_610316; /// NP_724593;, nucleotide= NM_001169604; /// NM_001169605; /// NM_001169606; /// NM_136472; /// NM_165549;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0017024 // myosin I binding // inferred from seque
FlyMine data for FBgn0033212.
TRiP has 1 RNAi stocks for FBgn0033212 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033212 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	2 of 4	1.00	None
Head	4 ± 0	2 of 4	0.60	Down
Eye	1 ± 0	0 of 4	0.23	Down
Thoracicoabdominal ganglion	5 ± 1	1 of 4	0.70	None
Salivary gland	4 ± 1	0 of 4	0.56	None
Crop	3 ± 1	0 of 4	0.40	Down
Midgut	11 ± 2	1 of 4	1.40	None
Tubule	4 ± 0	0 of 4	0.60	Down
Hindgut	4 ± 0	2 of 4	0.60	Down
Heart	3 ± 1	0 of 4	0.50	Down
Fat body	5 ± 1	3 of 4	0.64	None
Ovary	6 ± 0	0 of 4	0.90	None
Testis	5 ± 0	0 of 4	0.70	None
Male accessory glands	10 ± 1	2 of 4	1.40	None
Virgin spermatheca	3 ± 1	0 of 4	0.47	Down
Mated spermatheca	3 ± 1	0 of 4	0.49	Down
Adult carcass	11 ± 1	1 of 4	1.50	None
Larval CNS	2 ± 0	0 of 4	0.28	Down
Larval Salivary gland	17 ± 4	4 of 4	2.17	None
Larval midgut	7 ± 2	0 of 4	0.99	None
Larval tubule	11 ± 1	1 of 4	1.50	None
Larval hindgut	5 ± 1	2 of 4	0.63	None
Larval fat body	12 ± 0	1 of 4	1.60	Up
Larval trachea	0 ± 0	0 of 4	0.06	Down
Larval carcass	2 ± 0	0 of 4	0.30	Down
S2 cells (growing)	23 ± 2	3 of 4	3.06	Up
Whole fly	7 ± 0	1 of 4

Looking for S.C2R000283. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720