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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C2R000679 through 18771 annotations produced 1 hits



Eiger (egr):

Annotation Number : S.C2R000679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033483
Gbrowse : chr2R:5966516-5969137 (+) // 100.0 //
Probeset : 1629442_at
Accessions : protein= NP_724878; /// NP_995791;, nucleotide= NM_165735; /// NM_206069;
Pathway : 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural simila
Interpro : 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis f
FlyMine data for FBgn0033483.
BDGP gene expression has embryonic in situ data for eiger: 63 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0033483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 04 of 4 3.60Up
Head32 34 of 4 2.00Up
Eye18 04 of 4 1.17None
Thoracicoabdominal ganglion25 14 of 4 1.60Up
Salivary gland63 54 of 4 3.98Up
Crop36 54 of 4 2.30Up
Midgut25 24 of 4 1.60Up
Tubule130 114 of 4 8.30Up
Hindgut43 24 of 4 2.80Up
Heart83 54 of 4 5.26Up
Fat body9 20 of 4 0.59None
Ovary3 10 of 4 0.20Down
Testis1 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.11Down
Mated spermatheca1 00 of 4 0.11Down
Adult carcass20 31 of 4 1.30None
Larval CNS44 44 of 4 2.84Up
Larval Salivary gland1 00 of 4 0.10Down
Larval midgut4 10 of 4 0.27Down
Larval tubule64 34 of 4 4.10Up
Larval hindgut13 11 of 4 0.87None
Larval fat body141 104 of 4 8.90Up
Larval trachea3 00 of 4 0.20Down
Larval carcass7 20 of 4 0.47None
S2 cells (growing)456 74 of 428.87Up
Whole fly15 31 of 4

Looking for S.C2R000679. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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