FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C2R000679 through 18771 annotations produced 1 hits

Eiger (egr):

Annotation Number : S.C2R000679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033483
Gbrowse : chr2R:5966516-5969137 (+) // 100.0 //
Probeset : 1629442_at
Accessions : protein= NP_724878; /// NP_995791;, nucleotide= NM_165735; /// NM_206069;
Pathway : 0016020 // membrane // inferred from direct assay /// 0016020 // membrane // inferred from sequence or structural simila
Interpro : 0005164 // tumor necrosis factor receptor binding // inferred from electronic annotation /// 0005164 // tumor necrosis f
FlyMine data for FBgn0033483.
BDGP gene expression has embryonic in situ data for eiger: 63 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0033483 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	56 ± 0	4 of 4	3.60	Up
Head	32 ± 3	4 of 4	2.00	Up
Eye	18 ± 0	4 of 4	1.17	None
Thoracicoabdominal ganglion	25 ± 1	4 of 4	1.60	Up
Salivary gland	63 ± 5	4 of 4	3.98	Up
Crop	36 ± 5	4 of 4	2.30	Up
Midgut	25 ± 2	4 of 4	1.60	Up
Tubule	130 ± 11	4 of 4	8.30	Up
Hindgut	43 ± 2	4 of 4	2.80	Up
Heart	83 ± 5	4 of 4	5.26	Up
Fat body	9 ± 2	0 of 4	0.59	None
Ovary	3 ± 1	0 of 4	0.20	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	3 ± 1	0 of 4	0.20	Down
Virgin spermatheca	1 ± 0	0 of 4	0.11	Down
Mated spermatheca	1 ± 0	0 of 4	0.11	Down
Adult carcass	20 ± 3	1 of 4	1.30	None
Larval CNS	44 ± 4	4 of 4	2.84	Up
Larval Salivary gland	1 ± 0	0 of 4	0.10	Down
Larval midgut	4 ± 1	0 of 4	0.27	Down
Larval tubule	64 ± 3	4 of 4	4.10	Up
Larval hindgut	13 ± 1	1 of 4	0.87	None
Larval fat body	141 ± 10	4 of 4	8.90	Up
Larval trachea	3 ± 0	0 of 4	0.20	Down
Larval carcass	7 ± 2	0 of 4	0.47	None
S2 cells (growing)	456 ± 7	4 of 4	28.87	Up
Whole fly	15 ± 3	1 of 4

Looking for S.C2R000679. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720