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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C2R001120 through 18771 annotations produced 1 hits



Derailed 2 (Drl-2):

Annotation Number : S.C2R001120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033791
Gbrowse : chr2R:8999026-9000921 (+) // 100.0 // /// chr2R:8958315-8960203 (-) // 100.0 //
Probeset : 1625721_s_at
Accessions : protein= NP_610835;, nucleotide= NM_136991;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0033791.
TRiP has 1 RNAi stocks for FBgn0033791 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 00 of 4 1.80Up
Head9 10 of 4 1.50None
Eye3 20 of 4 0.61None
Thoracicoabdominal ganglion9 20 of 4 1.60None
Salivary gland4 00 of 4 0.67None
Crop3 10 of 4 0.50None
Midgut5 10 of 4 0.90None
Tubule2 10 of 4 0.40Down
Hindgut5 10 of 4 0.80None
Heart2 00 of 4 0.34None
Fat body10 20 of 4 1.71Up
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.20Down
Male accessory glands2 00 of 4 0.40None
Virgin spermatheca6 10 of 4 1.02None
Mated spermatheca9 10 of 4 1.60None
Adult carcass17 30 of 4 2.90Up
Larval CNS7 20 of 4 1.30None
Larval Salivary gland7 00 of 4 1.20None
Larval midgut1 00 of 4 0.22Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut1 00 of 4 0.23Down
Larval fat body4 20 of 4 0.80None
Larval trachea1 10 of 4 0.22Down
Larval carcass0 00 of 4 0.13Down
S2 cells (growing)2 10 of 4 0.33None
Whole fly6 10 of 4

Looking for S.C2R001120. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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