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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for S.C3L000206 through 18771 annotations produced 1 hits

anon-fast-evolving-3A8 (CG12004):

Annotation Number : S.C3L000206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035236
Gbrowse : chr3L:1574987-1575271 (+) // 100.0 //
Probeset : 1629808_at
Accessions : protein= NP_001097474; /// NP_647627; /// NP_728633;, nucleotide= NM_001104004; /// NM_139370; /// NM_167897;
FlyMine data for FBgn0035236.
BDGP gene expression has embryonic in situ data for CG12004: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035236 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 124 of 410.10Up
Head68 94 of 4 2.50Up
Eye24 24 of 4 0.90None
Thoracicoabdominal ganglion216 144 of 4 8.10Up
Salivary gland25 60 of 4 0.94None
Crop28 24 of 4 1.10None
Midgut32 10 of 4 1.20None
Tubule13 11 of 4 0.50Down
Hindgut28 24 of 4 1.00None
Heart57 34 of 4 2.14Up
Fat body46 64 of 4 1.73Up
Ovary14 13 of 4 0.50Down
Testis9 20 of 4 0.30Down
Male accessory glands24 31 of 4 0.90None
Virgin spermatheca17 32 of 4 0.66None
Mated spermatheca20 14 of 4 0.76None
Adult carcass42 32 of 4 1.60Up
Larval CNS61 64 of 4 2.27Up
Larval Salivary gland15 21 of 4 0.58Down
Larval midgut38 20 of 4 1.44Up
Larval tubule36 04 of 4 1.40Up
Larval hindgut32 34 of 4 1.19None
Larval fat body51 24 of 4 1.90Up
Larval trachea15 44 of 4 0.59Down
Larval carcass41 24 of 4 1.55Up
S2 cells (growing)15 12 of 4 0.56Down
Whole fly26 20 of 4

Looking for S.C3L000206. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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