FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C3L001582 through 18771 annotations produced 1 hits

rhodopsin (Rh7):

Annotation Number : S.C3L001582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036260
Gbrowse : chr3L:12161560-12161738 (-) // 100.0 //
Probeset : 1629596_s_at
Accessions : protein= NP_524035;, nucleotide= NM_079311;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036260.
BDGP gene expression has embryonic in situ data for Rh7: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036260 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	2 of 4	1.40	None
Head	11 ± 3	0 of 4	1.90	None
Eye	4 ± 1	0 of 4	0.77	None
Thoracicoabdominal ganglion	9 ± 3	0 of 4	1.50	None
Salivary gland	15 ± 5	0 of 4	2.55	None
Crop	10 ± 4	0 of 4	1.80	None
Midgut	8 ± 2	0 of 4	1.40	None
Tubule	8 ± 0	0 of 4	1.40	Up
Hindgut	6 ± 3	0 of 4	1.10	None
Heart	6 ± 1	0 of 4	1.12	None
Fat body	13 ± 6	0 of 4	2.23	None
Ovary	2 ± 0	0 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.30	None
Male accessory glands	7 ± 3	0 of 4	1.30	None
Virgin spermatheca	8 ± 2	0 of 4	1.47	None
Mated spermatheca	5 ± 2	0 of 4	0.93	None
Adult carcass	8 ± 4	0 of 4	1.50	None
Larval CNS	5 ± 3	0 of 4	1.01	None
Larval Salivary gland	8 ± 1	0 of 4	1.43	None
Larval midgut	4 ± 1	0 of 4	0.75	None
Larval tubule	5 ± 1	0 of 4	0.90	None
Larval hindgut	1 ± 0	0 of 4	0.28	None
Larval fat body	16 ± 5	0 of 4	2.80	None
Larval trachea	7 ± 4	0 of 4	1.30	None
Larval carcass	2 ± 0	0 of 4	0.44	None
S2 cells (growing)	10 ± 2	0 of 4	1.76	None
Whole fly	5 ± 1	0 of 4

Looking for S.C3L001582. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720