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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3L001638 through 18771 annotations produced 1 hits



():

Annotation Number : S.C3L001638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:12625956-12631135 (+) // 100.0 //
Probeset : 1623908_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.70None
Head6 ± 20 of 4 1.10None
Eye4 ± 10 of 4 0.83None
Thoracicoabdominal ganglion7 ± 20 of 4 1.40None
Salivary gland5 ± 00 of 4 1.03None
Crop6 ± 10 of 4 1.10None
Midgut8 ± 20 of 4 1.60None
Tubule7 ± 10 of 4 1.30None
Hindgut8 ± 10 of 4 1.50None
Heart8 ± 20 of 4 1.55None
Fat body7 ± 10 of 4 1.32None
Ovary5 ± 10 of 4 1.00None
Testis6 ± 20 of 4 1.10None
Male accessory glands19 ± 30 of 4 3.50Up
Virgin spermatheca8 ± 20 of 4 1.57None
Mated spermatheca8 ± 20 of 4 1.56None
Adult carcass6 ± 10 of 4 1.10None
Larval CNS10 ± 20 of 4 1.84Up
Larval Salivary gland8 ± 30 of 4 1.44None
Larval midgut3 ± 00 of 4 0.67None
Larval tubule5 ± 00 of 4 0.90None
Larval hindgut4 ± 10 of 4 0.78None
Larval fat body2 ± 00 of 4 0.50None
Larval trachea5 ± 30 of 4 0.94None
Larval carcass4 ± 10 of 4 0.88None
S2 cells (growing)10 ± 10 of 4 1.89None
Whole fly5 ± 10 of 4

Looking for S.C3L001638. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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