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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3L002285 through 18771 annotations produced 1 hits



(CG34002):

Annotation Number : S.C3L002285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054002
Gbrowse : chr3L:17867795-17870278 (+) // 100.0 // /// chr3L:17861820-17868997 (+) // 97.18 // /// chr3L:17851573-17862982 (+) // 96.76 //
Probeset : 1625512_s_at
Accessions : protein= NP_001034029;, nucleotide= NM_001038940;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0054002.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.10Down
Head4 ± 01 of 4 0.10Down
Eye16 ± 24 of 4 0.21Down
Thoracicoabdominal ganglion9 ± 02 of 4 0.10Down
Salivary gland10 ± 10 of 4 0.13Down
Crop6 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule7 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart4 ± 21 of 4 0.06Down
Fat body19 ± 93 of 4 0.25Down
Ovary2 ± 11 of 4 0.00Down
Testis23 ± 14 of 4 0.30Down
Male accessory glands6215 ± 2154 of 482.00Up
Virgin spermatheca15 ± 13 of 4 0.20Down
Mated spermatheca21 ± 53 of 4 0.28Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS25 ± 84 of 4 0.34Down
Larval Salivary gland8 ± 10 of 4 0.11Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.06Down
Larval fat body3 ± 00 of 4 0.00Down
Larval trachea11 ± 43 of 4 0.15Down
Larval carcass6 ± 10 of 4 0.08Down
S2 cells (growing)5 ± 00 of 4 0.07Down
Whole fly75 ± 84 of 4

Looking for S.C3L002285. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime