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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3L002478 through 18771 annotations produced 1 hits



(CG34116):

Annotation Number : S.C3L002478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083952
Gbrowse : chr3L:19798467-19799103 (-) // 100.0 //
Probeset : 1628330_at
Accessions : protein= NP_001036616;, nucleotide= NM_001043151;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0083952.
VDRC has 2 RNAi stocks for FBgn0083952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 04 of 4 1.10None
Head19 14 of 4 0.80None
Eye20 34 of 4 0.85None
Thoracicoabdominal ganglion26 14 of 4 1.10None
Salivary gland34 44 of 4 1.39None
Crop23 14 of 4 1.00None
Midgut17 21 of 4 0.70None
Tubule25 23 of 4 1.00None
Hindgut21 14 of 4 0.90None
Heart19 24 of 4 0.80None
Fat body16 63 of 4 0.68None
Ovary71 14 of 4 2.90Up
Testis11 04 of 4 0.50Down
Male accessory glands28 34 of 4 1.10None
Virgin spermatheca30 14 of 4 1.22Up
Mated spermatheca32 14 of 4 1.31Up
Adult carcass15 22 of 4 0.60Down
Larval CNS43 44 of 4 1.78Up
Larval Salivary gland22 04 of 4 0.91None
Larval midgut9 00 of 4 0.38Down
Larval tubule20 14 of 4 0.80None
Larval hindgut12 14 of 4 0.49Down
Larval fat body23 43 of 4 0.90None
Larval trachea30 34 of 4 1.23None
Larval carcass13 12 of 4 0.55Down
S2 cells (growing)31 24 of 4 1.27None
Whole fly24 14 of 4

Looking for S.C3L002478. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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