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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3L002620 through 18771 annotations produced 1 hits



(CG13253):

Annotation Number : S.C3L002620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037015
Gbrowse : chr3L:20706337-20708783 (-) // 100.0 //
Probeset : 1623315_at
Accessions : protein= NP_001097651; /// NP_001097652;, nucleotide= NM_001104181; /// NM_001104182;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005520 // insulin-like growth factor binding // inferred from electronic annotation
FlyMine data for FBgn0037015.
BDGP gene expression has embryonic in situ data for CG13253: 10 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0037015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 64 of 424.60Up
Head39 33 of 4 4.80Up
Eye2 10 of 4 0.31None
Thoracicoabdominal ganglion136 44 of 416.50Up
Salivary gland3 10 of 4 0.42None
Crop1 00 of 4 0.10None
Midgut1 00 of 4 0.20None
Tubule4 00 of 4 0.60Down
Hindgut4 10 of 4 0.60None
Heart2 00 of 4 0.34None
Fat body8 10 of 4 0.98None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.20None
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca6 10 of 4 0.82None
Mated spermatheca7 20 of 4 0.92None
Adult carcass3 10 of 4 0.40None
Larval CNS103 184 of 412.45Up
Larval Salivary gland0 00 of 4 0.11None
Larval midgut2 00 of 4 0.25None
Larval tubule1 00 of 4 0.10None
Larval hindgut1 00 of 4 0.21None
Larval fat body1 00 of 4 0.20None
Larval trachea0 00 of 4 0.09None
Larval carcass2 00 of 4 0.30None
S2 cells (growing)0 00 of 4 0.10None
Whole fly8 20 of 4

Looking for S.C3L002620. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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