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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3R000417 through 18771 annotations produced 2 hits



(CG14608):

Annotation Number : S.C3R000417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037487
Gbrowse : chr3R:3061378-3063192 (+) // 95.3 //
Probeset : 1626490_s_at
Accessions : protein= NP_001097699;, nucleotide= NM_001104229;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0037487.
VDRC has 2 RNAi stocks for FBgn0037487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60None
Head2 10 of 4 4.00None
Eye1 00 of 4 1.89None
Thoracicoabdominal ganglion0 00 of 4 1.10None
Salivary gland2 10 of 4 3.96None
Crop2 00 of 4 3.30None
Midgut1 00 of 4 2.70None
Tubule1 00 of 4 2.50Up
Hindgut1 00 of 4 1.40None
Heart0 00 of 4 0.89None
Fat body1 10 of 4 1.41None
Ovary0 00 of 4 1.00None
Testis0 00 of 4 1.10None
Male accessory glands1 10 of 4 2.60None
Virgin spermatheca2 00 of 4 2.96None
Mated spermatheca2 00 of 4 3.70None
Adult carcass1 00 of 4 1.50None
Larval CNS0 00 of 4 0.44None
Larval Salivary gland0 00 of 4 1.11None
Larval midgut0 00 of 4 0.52None
Larval tubule0 00 of 4 0.40None
Larval hindgut1 00 of 4 2.67None
Larval fat body3 10 of 4 5.30None
Larval trachea2 20 of 4 3.22None
Larval carcass4 11 of 4 6.78None
S2 cells (growing)0 00 of 4 1.19None
Whole fly0 00 of 4



(CG14608):

Annotation Number : S.C3R000417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037487
Gbrowse : chr3R:3061378-3063192 (+) // 95.3 //
Probeset : 1633864_at
Accessions : protein= NP_001097699;, nucleotide= NM_001104229;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0037487.
VDRC has 2 RNAi stocks for FBgn0037487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head1 00 of 4 1.60None
Eye0 00 of 4 0.74None
Thoracicoabdominal ganglion0 00 of 4 1.00None
Salivary gland1 00 of 4 2.00None
Crop2 00 of 4 3.60None
Midgut0 00 of 4 0.30None
Tubule0 00 of 4 1.20None
Hindgut0 00 of 4 1.10None
Heart0 00 of 4 0.44None
Fat body0 00 of 4 0.93None
Ovary0 00 of 4 0.90None
Testis0 00 of 4 0.30None
Male accessory glands1 10 of 4 2.50None
Virgin spermatheca0 00 of 4 0.22None
Mated spermatheca0 00 of 4 0.52None
Adult carcass1 00 of 4 2.60None
Larval CNS0 00 of 4 0.19None
Larval Salivary gland0 00 of 4 1.11None
Larval midgut0 00 of 4 0.30None
Larval tubule0 00 of 4 0.50None
Larval hindgut0 00 of 4 0.26None
Larval fat body0 00 of 4 0.60None
Larval trachea1 10 of 4 1.78None
Larval carcass1 00 of 4 2.81None
S2 cells (growing)0 00 of 4 1.07None
Whole fly0 00 of 4

Looking for S.C3R000417. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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