FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for S.C3R000469 through 18771 annotations produced 1 hits

Drosokinin receptor (CG34127):

Annotation Number : S.C3R000469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083963
Gbrowse : chr3R:3422589-3425992 (-) // 100.0 //
Probeset : 1623311_at
Accessions : protein= NP_001036685;, nucleotide= NM_001043220;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from ele
FlyMine data for FBgn0083963.
TRiP has 1 RNAi stocks for FBgn0083963 available for purchase.
VDRC has 4 RNAi stocks for FBgn0083963 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	2.20	None
Head	2 ± 1	0 of 4	3.70	None
Eye	1 ± 0	0 of 4	2.29	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.60	None
Salivary gland	2 ± 0	0 of 4	2.96	None
Crop	0 ± 0	0 of 4	1.20	None
Midgut	1 ± 0	0 of 4	1.70	Up
Tubule	0 ± 0	0 of 4	1.20	None
Hindgut	0 ± 0	0 of 4	1.30	None
Heart	0 ± 0	0 of 4	1.11	None
Fat body	1 ± 0	0 of 4	1.96	Up
Ovary	0 ± 0	0 of 4	1.00	None
Testis	0 ± 0	0 of 4	0.90	None
Male accessory glands	1 ± 0	0 of 4	1.80	None
Virgin spermatheca	2 ± 1	0 of 4	3.36	None
Mated spermatheca	1 ± 0	0 of 4	1.46	None
Adult carcass	1 ± 0	0 of 4	2.10	Up
Larval CNS	0 ± 0	0 of 4	0.89	None
Larval Salivary gland	1 ± 0	0 of 4	1.75	Up
Larval midgut	1 ± 0	0 of 4	2.04	None
Larval tubule	0 ± 0	0 of 4	1.10	None
Larval hindgut	0 ± 0	0 of 4	1.18	None
Larval fat body	2 ± 1	0 of 4	3.40	None
Larval trachea	0 ± 0	0 of 4	1.39	None
Larval carcass	1 ± 0	0 of 4	1.50	None
S2 cells (growing)	0 ± 0	0 of 4	0.86	None
Whole fly	0 ± 0	0 of 4

Looking for S.C3R000469. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720