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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for S.C3R001310 through 18771 annotations produced 1 hits


Annotation Number : S.C3R001310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038156
Gbrowse : chr3R:9287734-9288483 (+) // 100.0 //
Probeset : 1628246_at
Accessions : protein= NP_001034052;, nucleotide= NM_001038963;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0038156.
VDRC has 1 RNAi stocks for FBgn0038156 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 438.10Up
Head9 20 of 4 7.90Up
Eye2 10 of 4 1.96None
Thoracicoabdominal ganglion19 20 of 416.60Up
Salivary gland2 00 of 4 1.77None
Crop1 00 of 4 1.60None
Midgut2 00 of 4 1.80None
Tubule1 00 of 4 1.20None
Hindgut0 00 of 4 0.70None
Heart0 00 of 4 0.83None
Fat body2 10 of 4 2.15None
Ovary0 00 of 4 0.70None
Testis0 00 of 4 0.60None
Male accessory glands3 10 of 4 2.80None
Virgin spermatheca3 00 of 4 2.66None
Mated spermatheca5 20 of 4 4.98None
Adult carcass2 00 of 4 2.30None
Larval CNS10 20 of 4 8.91Up
Larval Salivary gland1 00 of 4 1.06None
Larval midgut1 00 of 4 1.64None
Larval tubule1 00 of 4 1.00None
Larval hindgut0 00 of 4 0.74None
Larval fat body2 00 of 4 2.10Up
Larval trachea1 00 of 4 1.30None
Larval carcass0 00 of 4 0.81None
S2 cells (growing)0 00 of 4 0.64None
Whole fly1 00 of 4

Looking for S.C3R001310. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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