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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3R001604 through 18771 annotations produced 1 hits



(CG34274):

Annotation Number : S.C3R001604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085303
Gbrowse : chr3R:11557599-11558371 (+) // 98.66 //
Probeset : 1635629_at
Accessions : protein= NP_001097807;, nucleotide= NM_001104337;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0085303.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye3 10 of 4 0.09Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland11 41 of 4 0.31Down
Crop3 11 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut3 11 of 4 0.10Down
Heart2 00 of 4 0.07Down
Fat body7 31 of 4 0.20Down
Ovary0 00 of 4 0.00Down
Testis434 324 of 411.70Up
Male accessory glands8 21 of 4 0.20Down
Virgin spermatheca6 21 of 4 0.18Down
Mated spermatheca8 01 of 4 0.22Down
Adult carcass5 21 of 4 0.20Down
Larval CNS2 11 of 4 0.05Down
Larval Salivary gland2 00 of 4 0.07Down
Larval midgut2 10 of 4 0.06Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 00 of 4 0.08Down
Larval fat body67 354 of 4 1.80None
Larval trachea3 41 of 4 0.10Down
Larval carcass2 10 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly37 34 of 4

Looking for S.C3R001604. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime