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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3R002243 through 18771 annotations produced 1 hits



(CG5630):

Annotation Number : S.C3R002243
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038842
Gbrowse : chr3R:16754401-16754723 (+) // 100.0 //
Probeset : 1632558_at
Accessions : protein= NP_001097851; /// NP_650929;, nucleotide= NM_001104381; /// NM_142672;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038842.
VDRC has 2 RNAi stocks for FBgn0038842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 00 of 4 0.30Down
Head71 24 of 4 1.20Up
Eye47 44 of 4 0.83None
Thoracicoabdominal ganglion17 40 of 4 0.30Down
Salivary gland1979 1234 of 434.50Up
Crop407 74 of 4 7.10Up
Midgut60 32 of 4 1.10None
Tubule246 244 of 4 4.30Up
Hindgut370 34 of 4 6.50Up
Heart73 84 of 4 1.27None
Fat body9 30 of 4 0.16Down
Ovary18 10 of 4 0.30Down
Testis26 20 of 4 0.50Down
Male accessory glands33 30 of 4 0.60Down
Virgin spermatheca213 274 of 4 3.71Up
Mated spermatheca250 264 of 4 4.36Up
Adult carcass170 84 of 4 3.00Up
Larval CNS35 34 of 4 0.62Down
Larval Salivary gland357 74 of 4 6.23Up
Larval midgut65 53 of 4 1.13None
Larval tubule374 184 of 4 6.50Up
Larval hindgut365 54 of 4 6.37Up
Larval fat body11 40 of 4 0.20Down
Larval trachea373 254 of 4 6.51Up
Larval carcass701 334 of 412.23Up
S2 cells (growing)33 40 of 4 0.58Down
Whole fly57 24 of 4

Looking for S.C3R002243. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime