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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.C3R002697 through 18771 annotations produced 1 hits



(CG34290):

Annotation Number : S.C3R002697
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085319
Gbrowse : chr3R:20114329-20114680 (-) // 100.0 //
Probeset : 1639983_at
Accessions : protein= NP_001097899;, nucleotide= NM_001104429;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0085319.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30Down
Head3 ± 10 of 4 0.50Down
Eye5 ± 21 of 4 0.67None
Thoracicoabdominal ganglion5 ± 21 of 4 0.70None
Salivary gland974 ± 824 of 4128.69Up
Crop22 ± 04 of 4 2.90Up
Midgut2 ± 00 of 4 0.30Down
Tubule5 ± 20 of 4 0.70None
Hindgut1 ± 00 of 4 0.20Down
Heart0 ± 00 of 4 0.05Down
Fat body2 ± 30 of 4 0.37None
Ovary1 ± 00 of 4 0.20Down
Testis2 ± 10 of 4 0.30Down
Male accessory glands5 ± 21 of 4 0.70None
Virgin spermatheca6 ± 22 of 4 0.86None
Mated spermatheca5 ± 21 of 4 0.77None
Adult carcass12 ± 30 of 4 1.70None
Larval CNS2 ± 00 of 4 0.27Down
Larval Salivary gland856 ± 624 of 4113.09Up
Larval midgut1 ± 00 of 4 0.14Down
Larval tubule3 ± 00 of 4 0.50Down
Larval hindgut0 ± 00 of 4 0.06Down
Larval fat body2 ± 00 of 4 0.40Down
Larval trachea3 ± 30 of 4 0.46None
Larval carcass2 ± 10 of 4 0.32Down
S2 cells (growing)2 ± 00 of 4 0.31Down
Whole fly7 ± 02 of 4

Looking for S.C3R002697. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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