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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.CX000784 through 18771 annotations produced 1 hits



(CG9650):

Annotation Number : S.CX000784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029939
Gbrowse : chrX:7120964-7126538 (+) // 100.0 //
Probeset : 1625641_s_at
Accessions : protein= NP_001096899; /// NP_001096900;, nucleotide= NM_001103429; /// NM_001103430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029939.
TRiP has 2 RNAi stocks for FBgn0029939 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029939 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.80None
Head7 ± 20 of 4 0.90None
Eye2 ± 20 of 4 0.32None
Thoracicoabdominal ganglion7 ± 30 of 4 0.90None
Salivary gland20 ± 60 of 4 2.40None
Crop12 ± 41 of 4 1.40None
Midgut10 ± 10 of 4 1.20None
Tubule4 ± 00 of 4 0.60Down
Hindgut8 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.21None
Fat body15 ± 91 of 4 1.83None
Ovary9 ± 00 of 4 1.10None
Testis3 ± 10 of 4 0.40None
Male accessory glands20 ± 30 of 4 2.30Up
Virgin spermatheca11 ± 20 of 4 1.34None
Mated spermatheca14 ± 20 of 4 1.60None
Adult carcass21 ± 31 of 4 2.50Up
Larval CNS15 ± 23 of 4 1.73None
Larval Salivary gland12 ± 00 of 4 1.41None
Larval midgut6 ± 20 of 4 0.78None
Larval tubule8 ± 20 of 4 1.00None
Larval hindgut11 ± 31 of 4 1.26None
Larval fat body13 ± 10 of 4 1.60None
Larval trachea3 ± 20 of 4 0.37None
Larval carcass13 ± 31 of 4 1.57None
S2 cells (growing)17 ± 10 of 4 2.05Up
Whole fly8 ± 20 of 4

Looking for S.CX000784. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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