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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.CX000966 through 18771 annotations produced 1 hits



(CG12075):

Annotation Number : S.CX000966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030065
Gbrowse : chrX:8761696-8762257 (+) // 100.0 //
Probeset : 1632062_s_at
Accessions : protein= NP_572506; /// NP_996386;, nucleotide= NM_132278; /// NM_206663;
FlyMine data for FBgn0030065.
BDGP gene expression has embryonic in situ data for CG12075: 32 pix of staining in 18 body parts.
VDRC has 3 RNAi stocks for FBgn0030065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.30None
Head10 ± 02 of 4 0.80None
Eye8 ± 00 of 4 0.65None
Thoracicoabdominal ganglion11 ± 20 of 4 0.90None
Salivary gland37 ± 30 of 4 2.99Up
Crop8 ± 20 of 4 0.70None
Midgut15 ± 20 of 4 1.20None
Tubule9 ± 00 of 4 0.80Down
Hindgut6 ± 00 of 4 0.50None
Heart2 ± 00 of 4 0.23Down
Fat body9 ± 00 of 4 0.77None
Ovary9 ± 11 of 4 0.70None
Testis4 ± 10 of 4 0.40Down
Male accessory glands16 ± 31 of 4 1.30None
Virgin spermatheca14 ± 21 of 4 1.14None
Mated spermatheca13 ± 10 of 4 1.06None
Adult carcass19 ± 41 of 4 1.60None
Larval CNS5 ± 21 of 4 0.41Down
Larval Salivary gland9 ± 40 of 4 0.77None
Larval midgut8 ± 20 of 4 0.63None
Larval tubule13 ± 13 of 4 1.10None
Larval hindgut5 ± 10 of 4 0.41Down
Larval fat body7 ± 20 of 4 0.60None
Larval trachea7 ± 20 of 4 0.61None
Larval carcass13 ± 20 of 4 1.10None
S2 cells (growing)7 ± 20 of 4 0.64None
Whole fly12 ± 23 of 4

Looking for S.CX000966. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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