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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for S.CX001156 through 18771 annotations produced 1 hits



X11Lbeta (X11Lbeta):

Annotation Number : S.CX001156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052677
Gbrowse : chrX:10567686-10573289 (+) // 100.0 //
Probeset : 1632788_at
Accessions : protein= NP_727440;, nucleotide= NM_167239;
Interpro : 0001540 // beta-amyloid binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inf
FlyMine data for FBgn0052677.
VDRC has 2 RNAi stocks for FBgn0052677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 4.60Up
Head3 10 of 4 0.60None
Eye7 11 of 4 1.38None
Thoracicoabdominal ganglion17 13 of 4 3.20Up
Salivary gland9 20 of 4 1.76None
Crop6 10 of 4 1.30None
Midgut11 14 of 4 2.20Up
Tubule5 00 of 4 1.10None
Hindgut4 00 of 4 0.70None
Heart2 11 of 4 0.53None
Fat body7 40 of 4 1.35None
Ovary2 11 of 4 0.50None
Testis2 10 of 4 0.50None
Male accessory glands4 10 of 4 0.80None
Virgin spermatheca2 10 of 4 0.48None
Mated spermatheca1 00 of 4 0.28None
Adult carcass4 20 of 4 0.80None
Larval CNS16 54 of 4 2.97Up
Larval Salivary gland4 20 of 4 0.81None
Larval midgut8 20 of 4 1.59None
Larval tubule10 12 of 4 1.90None
Larval hindgut4 02 of 4 0.76None
Larval fat body3 10 of 4 0.60None
Larval trachea2 10 of 4 0.40None
Larval carcass5 12 of 4 1.01None
S2 cells (growing)4 02 of 4 0.90None
Whole fly5 10 of 4

Looking for S.CX001156. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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