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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for SD04373 through 18771 annotations produced 1 hits



(CG5541):

Annotation Number : SD04373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030603
Gbrowse : chrX:14918487-14945873 (+) // 100.0 //
Probeset : 1640963_at
Accessions : protein= NP_996437; /// NP_996438;, nucleotide= NM_206714; /// NM_206715;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0030603.
TRiP has 2 RNAi stocks for FBgn0030603 available for purchase.
VDRC has 1 RNAi stocks for FBgn0030603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 44 of 4 0.40None
Head76 54 of 4 0.60None
Eye128 124 of 4 1.01None
Thoracicoabdominal ganglion96 14 of 4 0.80None
Salivary gland1057 614 of 4 8.29Up
Crop350 114 of 4 2.80Up
Midgut183 134 of 4 1.40None
Tubule154 124 of 4 1.20Up
Hindgut308 174 of 4 2.40Up
Heart522 314 of 4 4.10Up
Fat body407 864 of 4 3.20Up
Ovary243 164 of 4 1.90None
Testis37 34 of 4 0.30None
Male accessory glands494 374 of 4 3.90Up
Virgin spermatheca524 144 of 4 4.12Up
Mated spermatheca482 554 of 4 3.78Up
Adult carcass126 84 of 4 1.00None
Larval CNS63 234 of 4 0.50None
Larval Salivary gland349 504 of 4 2.74Up
Larval midgut763 1184 of 4 5.99Up
Larval tubule607 494 of 4 4.80Up
Larval hindgut453 554 of 4 3.56Up
Larval fat body38 94 of 4 0.30None
Larval trachea101 144 of 4 0.80None
Larval carcass242 694 of 4 1.90None
S2 cells (growing)228 84 of 4 1.79None
Whole fly127 424 of 4

Looking for SD04373. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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