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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:2L:15036316:15036972:GENSCAN through 18771 annotations produced 1 hits



(CG33679):

Annotation Number : Stencil:2L:15036316:15036972:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053679
Gbrowse : chr2L:15058231-15058887 (+) // 100.0 //
Probeset : 1629815_at
Accessions : protein= NP_001027273;, nucleotide= NM_001032102;
FlyMine data for FBgn0053679.
VDRC has 1 RNAi stocks for FBgn0053679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head13 ± 00 of 4 5.40Up
Eye14 ± 23 of 4 5.61Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland4 ± 10 of 4 1.76None
Crop3 ± 00 of 4 1.20None
Midgut0 ± 00 of 4 0.40None
Tubule3 ± 00 of 4 1.50Up
Hindgut1 ± 00 of 4 0.60None
Heart0 ± 00 of 4 0.17None
Fat body3 ± 40 of 4 1.44None
Ovary3 ± 00 of 4 1.20None
Testis2 ± 00 of 4 1.00None
Male accessory glands4 ± 00 of 4 1.70None
Virgin spermatheca1 ± 00 of 4 0.48None
Mated spermatheca1 ± 10 of 4 0.75None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS1 ± 10 of 4 0.64None
Larval Salivary gland3 ± 10 of 4 1.44None
Larval midgut0 ± 00 of 4 0.28None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.43None
Larval fat body1 ± 00 of 4 0.60None
Larval trachea1 ± 00 of 4 0.40None
Larval carcass0 ± 00 of 4 0.22None
S2 cells (growing)2 ± 00 of 4 0.79None
Whole fly2 ± 00 of 4

Looking for Stencil:2L:15036316:15036972:GENSCAN. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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