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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:2L:20464847:20465190:GENSCAN through 18771 annotations produced 1 hits



(CG34007):

Annotation Number : Stencil:2L:20464847:20465190:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054007
Gbrowse : chr2L:20495105-20495448 (+) // 100.0 //
Probeset : 1632399_at
Accessions : protein= NP_001033929;, nucleotide= NM_001038840;
FlyMine data for FBgn0054007.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head10 ± 12 of 4 0.50Down
Eye2 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland4 ± 20 of 4 0.22Down
Crop16 ± 22 of 4 0.80None
Midgut10 ± 10 of 4 0.50Down
Tubule9 ± 00 of 4 0.50Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.17Down
Fat body5 ± 40 of 4 0.27Down
Ovary2 ± 10 of 4 0.10Down
Testis4 ± 01 of 4 0.20Down
Male accessory glands7 ± 10 of 4 0.40Down
Virgin spermatheca3 ± 10 of 4 0.15Down
Mated spermatheca4 ± 10 of 4 0.22Down
Adult carcass25 ± 40 of 4 1.30None
Larval CNS3 ± 20 of 4 0.17Down
Larval Salivary gland2 ± 00 of 4 0.12Down
Larval midgut2 ± 10 of 4 0.13Down
Larval tubule7 ± 10 of 4 0.40Down
Larval hindgut6 ± 00 of 4 0.33Down
Larval fat body54 ± 84 of 4 2.70Up
Larval trachea3 ± 10 of 4 0.15Down
Larval carcass14 ± 10 of 4 0.70None
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly20 ± 24 of 4

Looking for Stencil:2L:20464847:20465190:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime