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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:2L:8002610:8001855:GENSCAN through 18771 annotations produced 1 hits



(CG34010):

Annotation Number : Stencil:2L:8002610:8001855:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054010
Gbrowse : chr2L:8009624-8010379 (-) // 100.0 //
Probeset : 1637173_at
Accessions : protein= NP_001033883;, nucleotide= NM_001038794;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0054010.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 04 of 4 1.50Up
Head9 ± 12 of 4 1.20None
Eye5 ± 00 of 4 0.68None
Thoracicoabdominal ganglion13 ± 11 of 4 1.60None
Salivary gland7 ± 30 of 4 0.88None
Crop6 ± 10 of 4 0.80None
Midgut21 ± 14 of 4 2.70Up
Tubule68 ± 54 of 4 8.40Up
Hindgut16 ± 14 of 4 2.00Up
Heart10 ± 13 of 4 1.27None
Fat body7 ± 20 of 4 0.86None
Ovary6 ± 02 of 4 0.80None
Testis2 ± 00 of 4 0.20Down
Male accessory glands14 ± 32 of 4 1.80None
Virgin spermatheca13 ± 11 of 4 1.60Up
Mated spermatheca13 ± 23 of 4 1.70None
Adult carcass2 ± 10 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.30Down
Larval Salivary gland5 ± 10 of 4 0.70None
Larval midgut8 ± 10 of 4 1.01None
Larval tubule51 ± 44 of 4 6.40Up
Larval hindgut8 ± 12 of 4 1.09None
Larval fat body8 ± 20 of 4 1.10None
Larval trachea4 ± 20 of 4 0.50None
Larval carcass3 ± 10 of 4 0.48None
S2 cells (growing)3 ± 10 of 4 0.42Down
Whole fly8 ± 11 of 4

Looking for Stencil:2L:8002610:8001855:GENSCAN. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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