FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for STENCIL:2L:9504835:9509500:GENSCAN through 18771 annotations produced 1 hits

(CG33298):

Annotation Number : Stencil:2L:9504835:9509500:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032120
Gbrowse : chr2L:9512606-9517271 (+) // 100.0 //
Probeset : 1629283_at
Accessions : protein= NP_001162919; /// NP_001162920; /// NP_995665; /// NP_995666;, nucleotide= NM_001169448; /// NM_001169449; /// NM_205943; /// NM_205944;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred f
FlyMine data for FBgn0032120.
VDRC has 1 RNAi stocks for FBgn0032120 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	2 of 4	0.70	None
Head	3 ± 1	0 of 4	0.40	Down
Eye	1 ± 0	0 of 4	0.16	Down
Thoracicoabdominal ganglion	5 ± 2	1 of 4	0.70	None
Salivary gland	12 ± 2	0 of 4	1.34	None
Crop	7 ± 1	1 of 4	0.90	None
Midgut	11 ± 1	0 of 4	1.30	None
Tubule	2 ± 0	0 of 4	0.30	Down
Hindgut	4 ± 0	0 of 4	0.50	None
Heart	0 ± 0	0 of 4	0.11	Down
Fat body	3 ± 2	0 of 4	0.43	None
Ovary	12 ± 1	4 of 4	1.30	None
Testis	4 ± 1	0 of 4	0.50	None
Male accessory glands	6 ± 1	0 of 4	0.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.21	Down
Mated spermatheca	1 ± 0	0 of 4	0.11	Down
Adult carcass	8 ± 2	0 of 4	1.00	None
Larval CNS	4 ± 1	1 of 4	0.54	None
Larval Salivary gland	4 ± 1	0 of 4	0.49	None
Larval midgut	5 ± 1	0 of 4	0.59	None
Larval tubule	8 ± 1	1 of 4	1.00	None
Larval hindgut	4 ± 1	0 of 4	0.49	None
Larval fat body	8 ± 2	0 of 4	1.00	None
Larval trachea	2 ± 2	0 of 4	0.24	Down
Larval carcass	3 ± 0	0 of 4	0.44	None
S2 cells (growing)	51 ± 3	4 of 4	5.74	Up
Whole fly	8 ± 1	2 of 4

Looking for Stencil:2L:9504835:9509500:GENSCAN. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720