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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:2L:9504835:9509500:GENSCAN through 18771 annotations produced 1 hits



(CG33298):

Annotation Number : Stencil:2L:9504835:9509500:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032120
Gbrowse : chr2L:9512606-9517271 (+) // 100.0 //
Probeset : 1629283_at
Accessions : protein= NP_001162919; /// NP_001162920; /// NP_995665; /// NP_995666;, nucleotide= NM_001169448; /// NM_001169449; /// NM_205943; /// NM_205944;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred f
FlyMine data for FBgn0032120.
VDRC has 1 RNAi stocks for FBgn0032120 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 0.70None
Head3 10 of 4 0.40Down
Eye1 00 of 4 0.16Down
Thoracicoabdominal ganglion5 21 of 4 0.70None
Salivary gland12 20 of 4 1.34None
Crop7 11 of 4 0.90None
Midgut11 10 of 4 1.30None
Tubule2 00 of 4 0.30Down
Hindgut4 00 of 4 0.50None
Heart0 00 of 4 0.11Down
Fat body3 20 of 4 0.43None
Ovary12 14 of 4 1.30None
Testis4 10 of 4 0.50None
Male accessory glands6 10 of 4 0.80None
Virgin spermatheca1 00 of 4 0.21Down
Mated spermatheca1 00 of 4 0.11Down
Adult carcass8 20 of 4 1.00None
Larval CNS4 11 of 4 0.54None
Larval Salivary gland4 10 of 4 0.49None
Larval midgut5 10 of 4 0.59None
Larval tubule8 11 of 4 1.00None
Larval hindgut4 10 of 4 0.49None
Larval fat body8 20 of 4 1.00None
Larval trachea2 20 of 4 0.24Down
Larval carcass3 00 of 4 0.44None
S2 cells (growing)51 34 of 4 5.74Up
Whole fly8 12 of 4

Looking for Stencil:2L:9504835:9509500:GENSCAN. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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