FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for STENCIL:2R:14394895:14398908:GENSCAN through 18771 annotations produced 1 hits

(CG34045):

Annotation Number : Stencil:2R:14394895:14398908:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054045
Gbrowse : chr2R:15218680-15222693 (+) // 100.0 //
Probeset : 1637093_at
Accessions : protein= NP_001033961;, nucleotide= NM_001038872;
FlyMine data for FBgn0054045.
VDRC has 1 RNAi stocks for FBgn0054045 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.60	None
Head	3 ± 2	0 of 4	0.40	None
Eye	1 ± 0	0 of 4	0.16	Down
Thoracicoabdominal ganglion	4 ± 0	0 of 4	0.60	None
Salivary gland	7 ± 1	0 of 4	0.90	None
Crop	4 ± 1	0 of 4	0.50	None
Midgut	29 ± 0	4 of 4	3.60	Up
Tubule	2 ± 0	0 of 4	0.30	Down
Hindgut	7 ± 2	0 of 4	0.90	None
Heart	4 ± 1	0 of 4	0.48	None
Fat body	2 ± 2	0 of 4	0.34	Down
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	2 ± 1	0 of 4	0.30	Down
Male accessory glands	4 ± 1	0 of 4	0.50	None
Virgin spermatheca	6 ± 0	0 of 4	0.74	None
Mated spermatheca	5 ± 2	0 of 4	0.62	None
Adult carcass	6 ± 1	0 of 4	0.80	None
Larval CNS	5 ± 0	0 of 4	0.64	None
Larval Salivary gland	2 ± 0	0 of 4	0.24	Down
Larval midgut	13 ± 0	1 of 4	1.59	Up
Larval tubule	4 ± 1	0 of 4	0.50	None
Larval hindgut	3 ± 1	0 of 4	0.41	None
Larval fat body	2 ± 0	0 of 4	0.20	Down
Larval trachea	0 ± 0	0 of 4	0.09	Down
Larval carcass	4 ± 1	0 of 4	0.53	None
S2 cells (growing)	1 ± 0	0 of 4	0.15	Down
Whole fly	8 ± 1	0 of 4

Looking for Stencil:2R:14394895:14398908:GENSCAN. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720