FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for STENCIL:2R:4635930:4634866:GENSCAN through 18771 annotations produced 2 hits

Not1 (Not1):

Annotation Number : Stencil:2R:4635930:4634866:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085436
Gbrowse : chr2R:5461739-5462803 (-) // 100.0 //
Probeset : 1624421_at
Accessions : protein= NP_001097242; /// NP_001097243; /// NP_001097244; /// NP_001163099;, nucleotide= NM_001103772; /// NM_001103773; /// NM_001103774; /// NM_001169628;
Interpro : 0017163 // basal transcription repressor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0085436.
TRiP has 3 RNAi stocks for FBgn0085436 available for purchase.
VDRC has 6 RNAi stocks for FBgn0085436 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.30	None
Head	4 ± 1	0 of 4	0.70	None
Eye	3 ± 1	0 of 4	0.49	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.10	None
Salivary gland	5 ± 1	0 of 4	0.82	None
Crop	5 ± 2	0 of 4	0.90	None
Midgut	4 ± 1	0 of 4	0.70	None
Tubule	5 ± 0	0 of 4	0.80	None
Hindgut	2 ± 0	0 of 4	0.40	None
Heart	4 ± 1	0 of 4	0.60	None
Fat body	4 ± 2	1 of 4	0.69	None
Ovary	4 ± 2	1 of 4	0.60	None
Testis	10 ± 1	3 of 4	1.60	None
Male accessory glands	11 ± 1	0 of 4	1.70	None
Virgin spermatheca	5 ± 1	0 of 4	0.75	None
Mated spermatheca	4 ± 1	0 of 4	0.71	None
Adult carcass	9 ± 1	0 of 4	1.40	None
Larval CNS	1 ± 0	0 of 4	0.23	None
Larval Salivary gland	1 ± 0	0 of 4	0.25	None
Larval midgut	7 ± 1	0 of 4	1.12	None
Larval tubule	9 ± 3	1 of 4	1.40	None
Larval hindgut	2 ± 1	0 of 4	0.35	None
Larval fat body	11 ± 4	0 of 4	1.70	None
Larval trachea	4 ± 1	0 of 4	0.73	None
Larval carcass	1 ± 0	0 of 4	0.25	None
S2 cells (growing)	20 ± 2	4 of 4	3.13	Up
Whole fly	6 ± 2	1 of 4

Not1 (Not1):

Annotation Number : Stencil:2R:4635930:4634866:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085436
Gbrowse : chr2R:5461739-5462803 (-) // 100.0 //
Probeset : 1637544_s_at
Accessions : protein= NP_001097242; /// NP_001097243; /// NP_001097244; /// NP_001163099;, nucleotide= NM_001103772; /// NM_001103773; /// NM_001103774; /// NM_001169628;
Interpro : 0017163 // basal transcription repressor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0085436.
TRiP has 3 RNAi stocks for FBgn0085436 available for purchase.
VDRC has 6 RNAi stocks for FBgn0085436 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.40	None
Head	4 ± 1	0 of 4	0.40	None
Eye	5 ± 1	1 of 4	0.46	None
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.50	None
Salivary gland	9 ± 3	0 of 4	0.87	None
Crop	8 ± 3	1 of 4	0.80	None
Midgut	14 ± 4	0 of 4	1.40	None
Tubule	3 ± 0	0 of 4	0.30	Down
Hindgut	6 ± 0	0 of 4	0.60	None
Heart	7 ± 1	1 of 4	0.69	None
Fat body	1 ± 0	0 of 4	0.12	Down
Ovary	4 ± 1	0 of 4	0.40	None
Testis	9 ± 3	1 of 4	0.80	None
Male accessory glands	5 ± 2	1 of 4	0.50	None
Virgin spermatheca	2 ± 0	0 of 4	0.24	Down
Mated spermatheca	2 ± 0	0 of 4	0.22	Down
Adult carcass	8 ± 2	0 of 4	0.80	None
Larval CNS	1 ± 1	0 of 4	0.15	Down
Larval Salivary gland	3 ± 2	0 of 4	0.30	None
Larval midgut	5 ± 2	1 of 4	0.47	None
Larval tubule	12 ± 2	2 of 4	1.10	None
Larval hindgut	6 ± 0	2 of 4	0.59	None
Larval fat body	17 ± 2	2 of 4	1.60	None
Larval trachea	7 ± 1	2 of 4	0.72	None
Larval carcass	1 ± 0	0 of 4	0.11	Down
S2 cells (growing)	20 ± 2	4 of 4	1.89	Up
Whole fly	10 ± 2	2 of 4

Looking for Stencil:2R:4635930:4634866:GENSCAN. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720