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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:2R:8056496:8059336:GENSCAN through 18771 annotations produced 1 hits



(CG33798):

Annotation Number : Stencil:2R:8056496:8059336:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053798
Gbrowse : chr2R:8879287-8882127 (+) // 100.0 //
Probeset : 1636187_at
Accessions : protein= NP_001027414;, nucleotide= NM_001032243;
FlyMine data for FBgn0053798.
VDRC has 3 RNAi stocks for FBgn0053798 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 3.60Up
Head8 ± 13 of 4 4.20Up
Eye5 ± 11 of 4 2.79None
Thoracicoabdominal ganglion8 ± 22 of 4 4.60Up
Salivary gland30 ± 32 of 415.41Up
Crop12 ± 14 of 4 6.20Up
Midgut9 ± 20 of 4 4.80Up
Tubule11 ± 11 of 4 6.10Up
Hindgut11 ± 13 of 4 5.60Up
Heart3 ± 10 of 4 1.99None
Fat body25 ± 84 of 413.10Up
Ovary3 ± 00 of 4 1.80None
Testis6 ± 03 of 4 3.20Up
Male accessory glands16 ± 23 of 4 8.60Up
Virgin spermatheca19 ± 34 of 4 9.79Up
Mated spermatheca26 ± 54 of 413.72Up
Adult carcass15 ± 62 of 4 7.80None
Larval CNS10 ± 44 of 4 5.56Up
Larval Salivary gland13 ± 13 of 4 6.78Up
Larval midgut6 ± 10 of 4 3.35Up
Larval tubule7 ± 10 of 4 4.00Up
Larval hindgut7 ± 13 of 4 3.99Up
Larval fat body11 ± 41 of 4 5.60None
Larval trachea2 ± 10 of 4 1.26None
Larval carcass7 ± 02 of 4 3.65Up
S2 cells (growing)6 ± 03 of 4 3.29Up
Whole fly2 ± 10 of 4

Looking for Stencil:2R:8056496:8059336:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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