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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:2R:8476483:8477383:GENSCAN through 18771 annotations produced 1 hits



/// Immune induced molecule 10 (CG33470 /// IM10):

Annotation Number : Stencil:2R:8476483:8477383:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033835 /// FBgn0053470
Gbrowse : chr2R:9299274-9300174 (+) // 100.0 // /// chr2R:9294547-9295447 (+) // 100.0 // /// chrUextra:268597-269497 (+) // 100.0 //
Probeset : 1639019_s_at
Accessions : protein= NP_725287; /// NP_725288; /// NP_995829; /// NP_995830;, nucleotide= NM_165981; /// NM_165982; /// NM_206107; /// NM_206108;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0033835 /// FBgn0053470.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 34 of 4 0.20Down
Head1625 214 of 4 4.30Up
Eye1421 2024 of 4 3.80Up
Thoracicoabdominal ganglion40 74 of 4 0.10Down
Salivary gland55 84 of 4 0.15Down
Crop2377 684 of 4 6.30Up
Midgut8 21 of 4 0.00Down
Tubule162 694 of 4 0.40Down
Hindgut748 384 of 4 2.00Up
Heart1875 2664 of 4 5.01Up
Fat body3277 3564 of 4 8.75Up
Ovary2 00 of 4 0.00Down
Testis3 12 of 4 0.00Down
Male accessory glands10 32 of 4 0.00Down
Virgin spermatheca3540 2094 of 4 9.45Up
Mated spermatheca2058 4674 of 4 5.50Up
Adult carcass2275 1684 of 4 6.10Up
Larval CNS9 44 of 4 0.02Down
Larval Salivary gland7 31 of 4 0.02Down
Larval midgut8 21 of 4 0.02Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut38 114 of 4 0.10Down
Larval fat body667 1484 of 4 1.80None
Larval trachea15 261 of 4 0.04Down
Larval carcass12 33 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly374 494 of 4

Looking for Stencil:2R:8476483:8477383:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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