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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:3L:15638226:15635536:GENSCAN through 18771 annotations produced 1 hits



(CG34452):

Annotation Number : Stencil:3L:15638226:15635536:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085481
Gbrowse : chr3L:15679757-15682341 (-) // 99.74 //
Probeset : 1628750_at
Accessions : protein= NP_001097611;, nucleotide= NM_001104141;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0008378 // galactosyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase
FlyMine data for FBgn0085481.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30Down
Head5 12 of 4 0.50Down
Eye7 13 of 4 0.54Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland10 01 of 4 0.78None
Crop9 23 of 4 0.70None
Midgut89 14 of 4 6.90Up
Tubule8 02 of 4 0.60Down
Hindgut7 11 of 4 0.60Down
Heart3 01 of 4 0.27Down
Fat body8 33 of 4 0.64None
Ovary4 02 of 4 0.30Down
Testis4 13 of 4 0.30Down
Male accessory glands12 10 of 4 0.90None
Virgin spermatheca4 02 of 4 0.32Down
Mated spermatheca6 12 of 4 0.53Down
Adult carcass9 22 of 4 0.70None
Larval CNS2 10 of 4 0.20Down
Larval Salivary gland6 11 of 4 0.49Down
Larval midgut51 54 of 4 3.97Up
Larval tubule5 11 of 4 0.40Down
Larval hindgut12 14 of 4 0.98None
Larval fat body10 14 of 4 0.80None
Larval trachea13 34 of 4 1.02None
Larval carcass7 13 of 4 0.60Down
S2 cells (growing)3 12 of 4 0.30Down
Whole fly12 14 of 4

Looking for Stencil:3L:15638226:15635536:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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