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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:3R:20925411:20920048:GENSCAN through 18771 annotations produced 1 hits



(CG34027):

Annotation Number : Stencil:3R:20925411:20920048:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054027
Gbrowse : chr3R:20929391-20934754 (-) // 100.0 //
Probeset : 1626141_at
Accessions : protein= NP_001034068;, nucleotide= NM_001038979;
FlyMine data for FBgn0054027.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.80None
Head4 ± 10 of 4 1.00None
Eye2 ± 00 of 4 0.42None
Thoracicoabdominal ganglion3 ± 11 of 4 0.60None
Salivary gland12 ± 40 of 4 2.66None
Crop6 ± 10 of 4 1.40None
Midgut3 ± 10 of 4 0.70None
Tubule4 ± 00 of 4 0.90Down
Hindgut5 ± 10 of 4 1.10None
Heart1 ± 00 of 4 0.33None
Fat body11 ± 12 of 4 2.33Up
Ovary1 ± 00 of 4 0.40None
Testis44 ± 24 of 4 9.20Up
Male accessory glands7 ± 00 of 4 1.50None
Virgin spermatheca3 ± 10 of 4 0.79None
Mated spermatheca4 ± 00 of 4 0.98None
Adult carcass5 ± 10 of 4 1.00None
Larval CNS5 ± 22 of 4 1.21None
Larval Salivary gland7 ± 00 of 4 1.50None
Larval midgut4 ± 10 of 4 0.92None
Larval tubule5 ± 11 of 4 1.20None
Larval hindgut3 ± 10 of 4 0.71None
Larval fat body15 ± 32 of 4 3.30Up
Larval trachea2 ± 20 of 4 0.44None
Larval carcass4 ± 00 of 4 0.88None
S2 cells (growing)1 ± 10 of 4 0.37None
Whole fly4 ± 12 of 4

Looking for Stencil:3R:20925411:20920048:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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