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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:3R:26323158:26324903:GENSCAN through 18771 annotations produced 1 hits



(CG34041):

Annotation Number : Stencil:3R:26323158:26324903:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054041
Gbrowse : chr3R:26333792-26335537 (+) // 100.0 //
Probeset : 1628408_at
Accessions : protein= NP_001034077;, nucleotide= NM_001038988;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0016702 // oxidoreduct
FlyMine data for FBgn0054041.
VDRC has 1 RNAi stocks for FBgn0054041 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.30Down
Head3 ± 00 of 4 0.20Down
Eye4 ± 00 of 4 0.26Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland11 ± 21 of 4 0.63None
Crop4 ± 10 of 4 0.20Down
Midgut4 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut3 ± 11 of 4 0.20Down
Heart2 ± 00 of 4 0.12Down
Fat body4 ± 30 of 4 0.26Down
Ovary2 ± 00 of 4 0.10Down
Testis4 ± 01 of 4 0.30Down
Male accessory glands2109 ± 544 of 4113.10Up
Virgin spermatheca5 ± 00 of 4 0.27Down
Mated spermatheca3 ± 10 of 4 0.19Down
Adult carcass4 ± 00 of 4 0.20Down
Larval CNS2 ± 00 of 4 0.12Down
Larval Salivary gland8 ± 12 of 4 0.47Down
Larval midgut7 ± 20 of 4 0.40Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut5 ± 13 of 4 0.29Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea4 ± 11 of 4 0.25Down
Larval carcass3 ± 10 of 4 0.18Down
S2 cells (growing)3 ± 11 of 4 0.19Down
Whole fly18 ± 24 of 4

Looking for Stencil:3R:26323158:26324903:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime