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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for STENCIL:3R:26850476:26851190:GENSCAN through 18771 annotations produced 1 hits



(CG33773):

Annotation Number : Stencil:3R:26850476:26851190:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053773
Gbrowse : chr3R:26861110-26861824 (+) // 100.0 //
Probeset : 1623579_at
Accessions : protein= NP_001027213;, nucleotide= NM_001032042;
FlyMine data for FBgn0053773.
VDRC has 1 RNAi stocks for FBgn0053773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.18Down
Crop0 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.10Down
Tubule0 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.20Down
Heart2 ± 00 of 4 0.12Down
Fat body2 ± 10 of 4 0.12Down
Ovary2 ± 10 of 4 0.10Down
Testis162 ± 84 of 4 8.90Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.19Down
Mated spermatheca3 ± 10 of 4 0.17Down
Adult carcass4 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.10Down
Larval Salivary gland4 ± 00 of 4 0.26Down
Larval midgut3 ± 00 of 4 0.20Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.13Down
Larval fat body25 ± 181 of 4 1.40None
Larval trachea2 ± 10 of 4 0.11Down
Larval carcass1 ± 10 of 4 0.10Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly18 ± 24 of 4

Looking for Stencil:3R:26850476:26851190:GENSCAN. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime