FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for STENCIL:X:16179240:16178679:GENSCAN through 18771 annotations produced 1 hits

(CG34015):

Annotation Number : Stencil:X:16179240:16178679:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0054015
Gbrowse : chrX:16341692-16342253 (-) // 100.0 //
Probeset : 1632373_s_at
Accessions : protein= NP_001033848;, nucleotide= NM_001038759;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0054015.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	61 ± 4	4 of 4	0.70	Down
Head	65 ± 4	4 of 4	0.70	None
Eye	119 ± 4	4 of 4	1.30	None
Thoracicoabdominal ganglion	71 ± 2	4 of 4	0.80	None
Salivary gland	126 ± 7	4 of 4	1.37	Up
Crop	111 ± 4	4 of 4	1.20	None
Midgut	131 ± 1	4 of 4	1.40	Up
Tubule	63 ± 1	4 of 4	0.70	Down
Hindgut	84 ± 4	4 of 4	0.90	None
Heart	122 ± 3	4 of 4	1.33	Up
Fat body	120 ± 20	4 of 4	1.31	None
Ovary	183 ± 3	4 of 4	2.00	Up
Testis	101 ± 4	4 of 4	1.10	None
Male accessory glands	83 ± 8	4 of 4	0.90	None
Virgin spermatheca	125 ± 5	4 of 4	1.37	Up
Mated spermatheca	126 ± 7	4 of 4	1.38	Up
Adult carcass	80 ± 3	4 of 4	0.90	None
Larval CNS	123 ± 14	4 of 4	1.35	Up
Larval Salivary gland	109 ± 6	4 of 4	1.19	None
Larval midgut	207 ± 4	4 of 4	2.26	Up
Larval tubule	132 ± 3	4 of 4	1.40	Up
Larval hindgut	106 ± 1	4 of 4	1.15	None
Larval fat body	141 ± 10	4 of 4	1.50	Up
Larval trachea	86 ± 12	4 of 4	0.94	None
Larval carcass	98 ± 8	4 of 4	1.07	None
S2 cells (growing)	81 ± 0	4 of 4	0.88	None
Whole fly	91 ± 9	4 of 4

Looking for Stencil:X:16179240:16178679:GENSCAN. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720