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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for STENCIL:X:16808883:16807923:GENSCAN through 18771 annotations produced 1 hits


Annotation Number : Stencil:X:16808883:16807923:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030812
Gbrowse : chrX:16970997-16971957 (-) // 100.0 //
Probeset : 1638383_at
Accessions : protein= NP_573187;, nucleotide= NM_132959;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030812.
VDRC has 3 RNAi stocks for FBgn0030812 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 74 of 419.00Up
Head5 10 of 4 1.90None
Eye17 24 of 4 6.31Up
Thoracicoabdominal ganglion16 24 of 4 6.00Up
Salivary gland8 40 of 4 3.04None
Crop7 20 of 4 2.50None
Midgut4 20 of 4 1.50None
Tubule3 00 of 4 1.20None
Hindgut5 10 of 4 1.80None
Heart12 30 of 4 4.34None
Fat body10 10 of 4 3.89Up
Ovary8 21 of 4 3.10None
Testis3 10 of 4 1.30None
Male accessory glands7 20 of 4 2.60None
Virgin spermatheca4 10 of 4 1.62None
Mated spermatheca2 00 of 4 0.90None
Adult carcass3 20 of 4 1.10None
Larval CNS26 54 of 4 9.58Up
Larval Salivary gland28 50 of 410.05Up
Larval midgut2 00 of 4 0.88None
Larval tubule4 21 of 4 1.70None
Larval hindgut3 00 of 4 1.29None
Larval fat body11 41 of 4 4.20None
Larval trachea20 32 of 4 7.46Up
Larval carcass4 10 of 4 1.54None
S2 cells (growing)7 21 of 4 2.77None
Whole fly2 10 of 4

Looking for Stencil:X:16808883:16807923:GENSCAN. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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