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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for TRANSPOSON.84 through 18771 annotations produced 1 hits



be ():

Annotation Number : Transposon.84
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : 32430
Gbrowse : E protein
Probeset : 1624377_s_at
Accessions : protein= NM_132762; /// NM_167424;, nucleotide= FBgn0052594
Pathway : 0005515 // protein binding // inferred from physical interaction
FlyMine data for 32430.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 24 of 4 3.20Up
Head36 44 of 4 2.10Up
Eye23 24 of 4 1.37None
Thoracicoabdominal ganglion49 94 of 4 2.80Up
Salivary gland100 64 of 4 5.73Up
Crop56 64 of 4 3.20Up
Midgut11 04 of 4 0.70None
Tubule17 04 of 4 1.00None
Hindgut50 44 of 4 2.90Up
Heart24 44 of 4 1.40None
Fat body93 234 of 4 5.34Up
Ovary12 14 of 4 0.70None
Testis10 14 of 4 0.60None
Male accessory glands64 64 of 4 3.70Up
Virgin spermatheca40 44 of 4 2.29Up
Mated spermatheca55 124 of 4 3.17Up
Adult carcass28 24 of 4 1.60None
Larval CNS131 244 of 4 7.49Up
Larval Salivary gland30 54 of 4 1.75None
Larval midgut10 04 of 4 0.58None
Larval tubule21 14 of 4 1.20None
Larval hindgut55 64 of 4 3.16Up
Larval fat body13 33 of 4 0.80None
Larval trachea26 84 of 4 1.49None
Larval carcass28 24 of 4 1.64Up
S2 cells (growing)41 84 of 4 2.40Up
Whole fly17 34 of 4

Looking for Transposon.84. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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