FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for X01472 through 18771 annotations produced 1 hits

March 2006 (FlyBase/BDGP 5.3) (chr3L:1506053-1513593 (+) // 99.78 // /// chr3L:24190145-24218437 (+) // 98.79 // /// chr2RHet:853622-861122 (+) // 99.74 // /// chr3LHet:1121680-1672151 (+) // 99.11 // /// chr3R:6629949-6637424 (+) // 99.23 // /// chr2R:6835587-6843081 (+) // 99.7 // /// chr2R:5614173-5621667 (+) // 99.58 // /// chr3L:10053266-11264513 (-) // 99.8 // /// chr3L:23817948-23825333 (-) // 95.83 // /// chr3L:23065380-23072702 (-) // 95.15 // /// chr3L:20320878-20327985 (-) // 90.51 // /// chr2RHet:1464324-1471764 (-) // 97.69 // /// chr3RHet:153628-161056 (-) // 98.14 // /// chr3RHet:58665-154160 (-) // 97.26 // /// chr2R:1789717-1797219 (-) // 99.76 // /// chrX:3647507-3655005 (-) // 99.78 // /// chrU:239746-1307049 (-) // 96.67 //):

Annotation Number : X01472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1626392_s_at
Accessions : protein= , nucleotide=
Interpro : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	607 ± 9	4 of 4	8.80	Up
Head	212 ± 24	4 of 4	3.10	Up
Eye	437 ± 35	4 of 4	6.38	Up
Thoracicoabdominal ganglion	386 ± 22	4 of 4	5.60	Up
Salivary gland	137 ± 21	4 of 4	2.00	Up
Crop	362 ± 31	4 of 4	5.30	Up
Midgut	60 ± 4	4 of 4	0.90	None
Tubule	47 ± 2	4 of 4	0.70	Down
Hindgut	111 ± 1	4 of 4	1.60	Up
Heart	103 ± 4	4 of 4	1.51	Up
Fat body	358 ± 94	4 of 4	5.22	Up
Ovary	17 ± 2	3 of 4	0.20	Down
Testis	295 ± 21	4 of 4	4.30	Up
Male accessory glands	196 ± 14	4 of 4	2.90	Up
Virgin spermatheca	185 ± 2	4 of 4	2.70	Up
Mated spermatheca	285 ± 58	4 of 4	4.15	Up
Adult carcass	128 ± 6	4 of 4	1.90	Up
Larval CNS	733 ± 68	4 of 4	10.69	Up
Larval Salivary gland	93 ± 8	4 of 4	1.36	None
Larval midgut	86 ± 1	4 of 4	1.25	None
Larval tubule	48 ± 5	4 of 4	0.70	None
Larval hindgut	106 ± 10	4 of 4	1.55	Up
Larval fat body	100 ± 26	4 of 4	1.50	None
Larval trachea	194 ± 11	4 of 4	2.84	Up
Larval carcass	123 ± 18	4 of 4	1.79	None
S2 cells (growing)	4380 ± 16	4 of 4	63.84	Up
Whole fly	68 ± 6	4 of 4

Looking for X01472. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720