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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1622892_s_at:

>probe:Drosophila_2:1622892_s_at:275:443; Interrogation_Position=1637; Antisense; GATGTGCTAACTCAACTGTATGCTT
>probe:Drosophila_2:1622892_s_at:42:297; Interrogation_Position=1683; Antisense; CGAAGGAGCCGAAACACTACAAGTG
>probe:Drosophila_2:1622892_s_at:450:521; Interrogation_Position=1705; Antisense; GTGGCTAATCAGCATTTCTTACGAC
>probe:Drosophila_2:1622892_s_at:625:707; Interrogation_Position=1723; Antisense; TTACGACACTTGGACAGGACGCTCT
>probe:Drosophila_2:1622892_s_at:319:557; Interrogation_Position=1734; Antisense; GGACAGGACGCTCTTTCCAACGTGG
>probe:Drosophila_2:1622892_s_at:681:185; Interrogation_Position=1752; Antisense; AACGTGGCGCCGGTCAATCTTTCTT
>probe:Drosophila_2:1622892_s_at:690:559; Interrogation_Position=1823; Antisense; GGAAATCCGCAGTACGCAGTCAATT
>probe:Drosophila_2:1622892_s_at:103:245; Interrogation_Position=1844; Antisense; AATTTGCGCGGCTATTTCACGCTGC
>probe:Drosophila_2:1622892_s_at:123:215; Interrogation_Position=1887; Antisense; AAGAGTTGCGCCTGGATGTGCAGCC
>probe:Drosophila_2:1622892_s_at:26:549; Interrogation_Position=1900; Antisense; GGATGTGCAGCCTCTTCAAGGAGAT
>probe:Drosophila_2:1622892_s_at:370:225; Interrogation_Position=1917; Antisense; AAGGAGATCTCCTCGGACTGCAGCG
>probe:Drosophila_2:1622892_s_at:108:361; Interrogation_Position=1941; Antisense; GCAATAGTCCGCTAACAAGGCTTTT
>probe:Drosophila_2:1622892_s_at:311:573; Interrogation_Position=1969; Antisense; GGCGTTTAAGAATCTCCTGGGCAAC
>probe:Drosophila_2:1622892_s_at:313:111; Interrogation_Position=2015; Antisense; AGCACCTGGAAGTTTTGCGCCACAA

Paste this into a BLAST search page for me
GATGTGCTAACTCAACTGTATGCTTCGAAGGAGCCGAAACACTACAAGTGGTGGCTAATCAGCATTTCTTACGACTTACGACACTTGGACAGGACGCTCTGGACAGGACGCTCTTTCCAACGTGGAACGTGGCGCCGGTCAATCTTTCTTGGAAATCCGCAGTACGCAGTCAATTAATTTGCGCGGCTATTTCACGCTGCAAGAGTTGCGCCTGGATGTGCAGCCGGATGTGCAGCCTCTTCAAGGAGATAAGGAGATCTCCTCGGACTGCAGCGGCAATAGTCCGCTAACAAGGCTTTTGGCGTTTAAGAATCTCCTGGGCAACAGCACCTGGAAGTTTTGCGCCACAA

Full Affymetrix probeset data:

Annotations for 1622892_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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