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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1622899_at:

>probe:Drosophila_2:1622899_at:85:155; Interrogation_Position=1228; Antisense; ACAGCACGGAGGTTTGCTTTATCAA
>probe:Drosophila_2:1622899_at:589:341; Interrogation_Position=1243; Antisense; GCTTTATCAACACAGACGACTCTCA
>probe:Drosophila_2:1622899_at:417:661; Interrogation_Position=1274; Antisense; TAAACCTGCGAAAAGCTCCTCCGAC
>probe:Drosophila_2:1622899_at:579:407; Interrogation_Position=1296; Antisense; GACGAGGACGAAACTATACCCCAGT
>probe:Drosophila_2:1622899_at:645:659; Interrogation_Position=1334; Antisense; TAACAAGGTCCTGGGCGTTCTTCTG
>probe:Drosophila_2:1622899_at:708:415; Interrogation_Position=1379; Antisense; GAGCCGACTGAAGACTATGTTGCGA
>probe:Drosophila_2:1622899_at:605:721; Interrogation_Position=1416; Antisense; TTGATCAGTGGTTACGAGCTGCTTT
>probe:Drosophila_2:1622899_at:586:417; Interrogation_Position=1431; Antisense; GAGCTGCTTTGATGCACTCAACACA
>probe:Drosophila_2:1622899_at:718:173; Interrogation_Position=1455; Antisense; AAAGCTGCGAGTGAAAGCGCTCCTC
>probe:Drosophila_2:1622899_at:411:631; Interrogation_Position=1475; Antisense; TCCTCGTCGGATTCAGAAGCTTCAC
>probe:Drosophila_2:1622899_at:377:699; Interrogation_Position=1552; Antisense; TTTTATTTACTGCAGTTACGGCGCT
>probe:Drosophila_2:1622899_at:232:669; Interrogation_Position=1568; Antisense; TACGGCGCTGCCAGATCAGTTAAAA
>probe:Drosophila_2:1622899_at:433:603; Interrogation_Position=1601; Antisense; TGTTGCTCACATGGGCGCAGTTGAA
>probe:Drosophila_2:1622899_at:45:663; Interrogation_Position=1715; Antisense; TAACACTTTGCCCATTACTCAGAAG

Paste this into a BLAST search page for me
ACAGCACGGAGGTTTGCTTTATCAAGCTTTATCAACACAGACGACTCTCATAAACCTGCGAAAAGCTCCTCCGACGACGAGGACGAAACTATACCCCAGTTAACAAGGTCCTGGGCGTTCTTCTGGAGCCGACTGAAGACTATGTTGCGATTGATCAGTGGTTACGAGCTGCTTTGAGCTGCTTTGATGCACTCAACACAAAAGCTGCGAGTGAAAGCGCTCCTCTCCTCGTCGGATTCAGAAGCTTCACTTTTATTTACTGCAGTTACGGCGCTTACGGCGCTGCCAGATCAGTTAAAATGTTGCTCACATGGGCGCAGTTGAATAACACTTTGCCCATTACTCAGAAG

Full Affymetrix probeset data:

Annotations for 1622899_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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