FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1622945_a_at:

>probe:Drosophila_2:1622945_a_at:185:585; Interrogation_Position=1426; Antisense; TGGACAAGCTCGTCGGCGAATTCAT
>probe:Drosophila_2:1622945_a_at:299:369; Interrogation_Position=1466; Antisense; GAATCCAACGTTCATCTGTGAGCAT
>probe:Drosophila_2:1622945_a_at:729:589; Interrogation_Position=1482; Antisense; TGTGAGCATCCGCAGATCATGTCGC
>probe:Drosophila_2:1622945_a_at:215:333; Interrogation_Position=1508; Antisense; GCTGGCCAAGTACCATCGCAGTATT
>probe:Drosophila_2:1622945_a_at:248:121; Interrogation_Position=1546; Antisense; AGCGCTTCGAACTGTTTGTGGCCAA
>probe:Drosophila_2:1622945_a_at:490:549; Interrogation_Position=1574; Antisense; GGAGATTTGCAACGCGTATACCGAG
>probe:Drosophila_2:1622945_a_at:606:121; Interrogation_Position=1624; Antisense; AGCGTTTCGAGCAGCAGGCCAGCGA
>probe:Drosophila_2:1622945_a_at:709:55; Interrogation_Position=1666; Antisense; ATGAGGCCCAGCTGGTCGACGAGAA
>probe:Drosophila_2:1622945_a_at:661:107; Interrogation_Position=1687; Antisense; AGAACTTCTGCACGTCCCTGGAGTA
>probe:Drosophila_2:1622945_a_at:473:261; Interrogation_Position=1724; Antisense; CACCGGTGGTTTTGGCATGGGCATC
>probe:Drosophila_2:1622945_a_at:487:31; Interrogation_Position=1785; Antisense; ATCAAGGAGGTTCTGCTGTTCCCCG
>probe:Drosophila_2:1622945_a_at:447:357; Interrogation_Position=1860; Antisense; GCACAGCAGTAGATGGCCAACGCCG
>probe:Drosophila_2:1622945_a_at:551:645; Interrogation_Position=1895; Antisense; TCAGACCCAATCCTTGTACGTTACG
>probe:Drosophila_2:1622945_a_at:331:303; Interrogation_Position=1926; Antisense; CCGGACTAATCCCAGTTGCTAAGTT

Paste this into a BLAST search page for me
TGGACAAGCTCGTCGGCGAATTCATGAATCCAACGTTCATCTGTGAGCATTGTGAGCATCCGCAGATCATGTCGCGCTGGCCAAGTACCATCGCAGTATTAGCGCTTCGAACTGTTTGTGGCCAAGGAGATTTGCAACGCGTATACCGAGAGCGTTTCGAGCAGCAGGCCAGCGAATGAGGCCCAGCTGGTCGACGAGAAAGAACTTCTGCACGTCCCTGGAGTACACCGGTGGTTTTGGCATGGGCATCATCAAGGAGGTTCTGCTGTTCCCCGGCACAGCAGTAGATGGCCAACGCCGTCAGACCCAATCCTTGTACGTTACGCCGGACTAATCCCAGTTGCTAAGTT

Full Affymetrix probeset data:

Annotations for 1622945_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720