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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1622947_s_at:

>probe:Drosophila_2:1622947_s_at:665:661; Interrogation_Position=1057; Antisense; TAACAGCAGCCAGACAAGTGCAGAA
>probe:Drosophila_2:1622947_s_at:131:39; Interrogation_Position=1158; Antisense; ATCTGCACATCTTAGCGATTCGATT
>probe:Drosophila_2:1622947_s_at:616:729; Interrogation_Position=1186; Antisense; TTGGATTAGTTGTCAGCCGGCCATC
>probe:Drosophila_2:1622947_s_at:164:127; Interrogation_Position=1236; Antisense; AGCCACGCGAATCTGCAGGAGAGAC
>probe:Drosophila_2:1622947_s_at:567:425; Interrogation_Position=1254; Antisense; GAGAGACACTGCCAAACAAACGATG
>probe:Drosophila_2:1622947_s_at:140:41; Interrogation_Position=1302; Antisense; ATCGATGGGTCGGTCAGGTCAGTCC
>probe:Drosophila_2:1622947_s_at:54:647; Interrogation_Position=1315; Antisense; TCAGGTCAGTCCGTCGTCGTTGGAT
>probe:Drosophila_2:1622947_s_at:367:303; Interrogation_Position=1325; Antisense; CCGTCGTCGTTGGATGTAGCTTTGA
>probe:Drosophila_2:1622947_s_at:294:681; Interrogation_Position=1453; Antisense; TATGGCTCAAAAGGCATTGCATTTT
>probe:Drosophila_2:1622947_s_at:292:693; Interrogation_Position=1476; Antisense; TTTTTCAGTTCTCAAGGCTTTACGG
>probe:Drosophila_2:1622947_s_at:159:465; Interrogation_Position=1500; Antisense; GATTGCCTGCAAAATCCTGCGGCGA
>probe:Drosophila_2:1622947_s_at:210:283; Interrogation_Position=1516; Antisense; CTGCGGCGAAACTAGGACACACATA
>probe:Drosophila_2:1622947_s_at:320:237; Interrogation_Position=1566; Antisense; AATCTTTACCTTTTCGTTGTGCATT
>probe:Drosophila_2:1622947_s_at:382:277; Interrogation_Position=1575; Antisense; CTTTTCGTTGTGCATTTACCTGAGA

Paste this into a BLAST search page for me
TAACAGCAGCCAGACAAGTGCAGAAATCTGCACATCTTAGCGATTCGATTTTGGATTAGTTGTCAGCCGGCCATCAGCCACGCGAATCTGCAGGAGAGACGAGAGACACTGCCAAACAAACGATGATCGATGGGTCGGTCAGGTCAGTCCTCAGGTCAGTCCGTCGTCGTTGGATCCGTCGTCGTTGGATGTAGCTTTGATATGGCTCAAAAGGCATTGCATTTTTTTTTCAGTTCTCAAGGCTTTACGGGATTGCCTGCAAAATCCTGCGGCGACTGCGGCGAAACTAGGACACACATAAATCTTTACCTTTTCGTTGTGCATTCTTTTCGTTGTGCATTTACCTGAGA

Full Affymetrix probeset data:

Annotations for 1622947_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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