FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1622992_at:

>probe:Drosophila_2:1622992_at:117:727; Interrogation_Position=1794; Antisense; TTGTGTGGACACAGAGCACCCAAAT
>probe:Drosophila_2:1622992_at:594:419; Interrogation_Position=1807; Antisense; GAGCACCCAAATGGGAACCACCAAA
>probe:Drosophila_2:1622992_at:274:169; Interrogation_Position=1850; Antisense; AAATGGATATATGTTCTCTAGTCAG
>probe:Drosophila_2:1622992_at:503:681; Interrogation_Position=1859; Antisense; TATGTTCTCTAGTCAGTGTATGTAA
>probe:Drosophila_2:1622992_at:433:663; Interrogation_Position=1900; Antisense; TAAAGTTCATTTTTGTGTTCGGAAT
>probe:Drosophila_2:1622992_at:273:277; Interrogation_Position=1983; Antisense; CTAACCATTGGATTTAAGAACTTCA
>probe:Drosophila_2:1622992_at:494:483; Interrogation_Position=2032; Antisense; GTATGAATACAAACTATGCTGAAAC
>probe:Drosophila_2:1622992_at:259:391; Interrogation_Position=2052; Antisense; GAAACTATTTATGTGGATTCCACCT
>probe:Drosophila_2:1622992_at:175:595; Interrogation_Position=2063; Antisense; TGTGGATTCCACCTACATCGGTCAA
>probe:Drosophila_2:1622992_at:265:721; Interrogation_Position=2069; Antisense; TTCCACCTACATCGGTCAACTTTTA
>probe:Drosophila_2:1622992_at:544:165; Interrogation_Position=2133; Antisense; AAAGTTTTAGGATGCATAATGCTTA
>probe:Drosophila_2:1622992_at:408:231; Interrogation_Position=2237; Antisense; AATGTTCCTTAATTTATATGCTATT
>probe:Drosophila_2:1622992_at:177:257; Interrogation_Position=2323; Antisense; CAAATAATTTGTTACTGATCGAGAT
>probe:Drosophila_2:1622992_at:333:73; Interrogation_Position=2355; Antisense; AGGACCACTATTTTTGAGAACAGTT

Paste this into a BLAST search page for me
TTGTGTGGACACAGAGCACCCAAATGAGCACCCAAATGGGAACCACCAAAAAATGGATATATGTTCTCTAGTCAGTATGTTCTCTAGTCAGTGTATGTAATAAAGTTCATTTTTGTGTTCGGAATCTAACCATTGGATTTAAGAACTTCAGTATGAATACAAACTATGCTGAAACGAAACTATTTATGTGGATTCCACCTTGTGGATTCCACCTACATCGGTCAATTCCACCTACATCGGTCAACTTTTAAAAGTTTTAGGATGCATAATGCTTAAATGTTCCTTAATTTATATGCTATTCAAATAATTTGTTACTGATCGAGATAGGACCACTATTTTTGAGAACAGTT

Full Affymetrix probeset data:

Annotations for 1622992_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720