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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623019_a_at:

>probe:Drosophila_2:1623019_a_at:378:21; Interrogation_Position=9447; Antisense; ATATTCCCGCAGAGCGACATCTGGT
>probe:Drosophila_2:1623019_a_at:481:329; Interrogation_Position=9520; Antisense; GCGGAGCCGACGAGTACGAGACCAA
>probe:Drosophila_2:1623019_a_at:522:413; Interrogation_Position=9539; Antisense; GACCAAGCAAAACATCTCCTTCGTG
>probe:Drosophila_2:1623019_a_at:360:291; Interrogation_Position=9560; Antisense; CGTGCGCTACAGGTTCGAGAATCTT
>probe:Drosophila_2:1623019_a_at:581:701; Interrogation_Position=9583; Antisense; TTTTCAAAGAGGTCACGCCCGAGGC
>probe:Drosophila_2:1623019_a_at:705:29; Interrogation_Position=9656; Antisense; ATACACCGAGGATTGCTTGGAGCAC
>probe:Drosophila_2:1623019_a_at:278:113; Interrogation_Position=9676; Antisense; AGCACAGGTGGCTCATGTCGTCGGA
>probe:Drosophila_2:1623019_a_at:469:59; Interrogation_Position=9690; Antisense; ATGTCGTCGGACTACATGGTCAGGA
>probe:Drosophila_2:1623019_a_at:542:645; Interrogation_Position=9709; Antisense; TCAGGAAGCGCGAGCGTGCCATCTT
>probe:Drosophila_2:1623019_a_at:667:497; Interrogation_Position=9745; Antisense; GTCTCAAGACGTTCTGCGACGAGTA
>probe:Drosophila_2:1623019_a_at:543:429; Interrogation_Position=9765; Antisense; GAGTATCACGACCTCAAGAACGCCT
>probe:Drosophila_2:1623019_a_at:714:165; Interrogation_Position=9804; Antisense; AAAGTCCTGAACACGGTCGCCGGCG
>probe:Drosophila_2:1623019_a_at:1:301; Interrogation_Position=9837; Antisense; CCTACTCAACTACTTCGATCGAATA
>probe:Drosophila_2:1623019_a_at:289:335; Interrogation_Position=9875; Antisense; GCTGCTCACCACATTTTAGTCAATT

Paste this into a BLAST search page for me
ATATTCCCGCAGAGCGACATCTGGTGCGGAGCCGACGAGTACGAGACCAAGACCAAGCAAAACATCTCCTTCGTGCGTGCGCTACAGGTTCGAGAATCTTTTTTCAAAGAGGTCACGCCCGAGGCATACACCGAGGATTGCTTGGAGCACAGCACAGGTGGCTCATGTCGTCGGAATGTCGTCGGACTACATGGTCAGGATCAGGAAGCGCGAGCGTGCCATCTTGTCTCAAGACGTTCTGCGACGAGTAGAGTATCACGACCTCAAGAACGCCTAAAGTCCTGAACACGGTCGCCGGCGCCTACTCAACTACTTCGATCGAATAGCTGCTCACCACATTTTAGTCAATT

Full Affymetrix probeset data:

Annotations for 1623019_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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