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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623070_a_at:

>probe:Drosophila_2:1623070_a_at:693:293; Interrogation_Position=1368; Antisense; CGCATCATGCGTCTGTTCAAGCTGA
>probe:Drosophila_2:1623070_a_at:580:145; Interrogation_Position=1399; Antisense; ACTCGTCCGGACTGAAGATCCTGAT
>probe:Drosophila_2:1623070_a_at:467:215; Interrogation_Position=1413; Antisense; AAGATCCTGATCCAGACGTTCCGGG
>probe:Drosophila_2:1623070_a_at:633:75; Interrogation_Position=1447; Antisense; AGGAGCTGACCCTGCTGGTGTTCTT
>probe:Drosophila_2:1623070_a_at:588:605; Interrogation_Position=1489; Antisense; TGATCTTCGCCAGCCTTGTCTACTA
>probe:Drosophila_2:1623070_a_at:98:633; Interrogation_Position=1535; Antisense; TCCGCACAACGACTTCAACAGCATA
>probe:Drosophila_2:1623070_a_at:193:189; Interrogation_Position=1551; Antisense; AACAGCATACCGCTGGGCCTGTGGT
>probe:Drosophila_2:1623070_a_at:27:595; Interrogation_Position=1570; Antisense; TGTGGTGGGCCCTGGTCACAATGAC
>probe:Drosophila_2:1623070_a_at:655:201; Interrogation_Position=1625; Antisense; AACCTACATCGGCATGTTCGTGGGC
>probe:Drosophila_2:1623070_a_at:104:639; Interrogation_Position=1702; Antisense; TCGTCAGCAACTTCGCCATGTACTA
>probe:Drosophila_2:1623070_a_at:41:71; Interrogation_Position=1738; Antisense; AGGCCAGGGCCAAACTGCCAAAGAA
>probe:Drosophila_2:1623070_a_at:501:423; Interrogation_Position=1766; Antisense; GAGACGAGTGCTTCCCGTCGAGCAG
>probe:Drosophila_2:1623070_a_at:445:487; Interrogation_Position=1885; Antisense; GTACTGGACCACGTCGCATGAACAA
>probe:Drosophila_2:1623070_a_at:108:1; Interrogation_Position=1916; Antisense; AAAGGACCTGGTCAGCCCCAAGTCA

Paste this into a BLAST search page for me
CGCATCATGCGTCTGTTCAAGCTGAACTCGTCCGGACTGAAGATCCTGATAAGATCCTGATCCAGACGTTCCGGGAGGAGCTGACCCTGCTGGTGTTCTTTGATCTTCGCCAGCCTTGTCTACTATCCGCACAACGACTTCAACAGCATAAACAGCATACCGCTGGGCCTGTGGTTGTGGTGGGCCCTGGTCACAATGACAACCTACATCGGCATGTTCGTGGGCTCGTCAGCAACTTCGCCATGTACTAAGGCCAGGGCCAAACTGCCAAAGAAGAGACGAGTGCTTCCCGTCGAGCAGGTACTGGACCACGTCGCATGAACAAAAAGGACCTGGTCAGCCCCAAGTCA

Full Affymetrix probeset data:

Annotations for 1623070_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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