FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623140_at:

>probe:Drosophila_2:1623140_at:273:125; Interrogation_Position=2537; Antisense; AGCCGCCTTTTCGAACGTATGATGA
>probe:Drosophila_2:1623140_at:423:91; Interrogation_Position=2603; Antisense; AGTATGCAGAGCTGGTTGGCCGTCT
>probe:Drosophila_2:1623140_at:512:317; Interrogation_Position=2621; Antisense; GCCGTCTCCTTGAGTTTCGGAAGTA
>probe:Drosophila_2:1623140_at:203:489; Interrogation_Position=2643; Antisense; GTACGAGACCATGTTCCTGGTGGAA
>probe:Drosophila_2:1623140_at:275:531; Interrogation_Position=2661; Antisense; GGTGGAACCCGACTTCAATCGATAT
>probe:Drosophila_2:1623140_at:83:295; Interrogation_Position=2757; Antisense; CGAACAGCAAAAGGTCTTCTCCCGA
>probe:Drosophila_2:1623140_at:469:199; Interrogation_Position=2795; Antisense; AACGCGACGATTTTTGCTTCTTCAA
>probe:Drosophila_2:1623140_at:233:271; Interrogation_Position=2811; Antisense; CTTCTTCAACAATATACCCTTCGGA
>probe:Drosophila_2:1623140_at:726:541; Interrogation_Position=2833; Antisense; GGATTTCCCTTGCATGAGAACTCCG
>probe:Drosophila_2:1623140_at:9:151; Interrogation_Position=2975; Antisense; ACTTGAGTCCTCATCGTGAATTCAG
>probe:Drosophila_2:1623140_at:648:245; Interrogation_Position=2993; Antisense; AATTCAGGGCCATGCAGATTCAGGA
>probe:Drosophila_2:1623140_at:11:483; Interrogation_Position=3055; Antisense; GTATTATCCTCGCTAGTTTGGCTGC
>probe:Drosophila_2:1623140_at:481:581; Interrogation_Position=3073; Antisense; TGGCTGCTGGAAAACTTGGCGTACA
>probe:Drosophila_2:1623140_at:179:727; Interrogation_Position=3088; Antisense; TTGGCGTACACGACACTAAACACAT

Paste this into a BLAST search page for me
AGCCGCCTTTTCGAACGTATGATGAAGTATGCAGAGCTGGTTGGCCGTCTGCCGTCTCCTTGAGTTTCGGAAGTAGTACGAGACCATGTTCCTGGTGGAAGGTGGAACCCGACTTCAATCGATATCGAACAGCAAAAGGTCTTCTCCCGAAACGCGACGATTTTTGCTTCTTCAACTTCTTCAACAATATACCCTTCGGAGGATTTCCCTTGCATGAGAACTCCGACTTGAGTCCTCATCGTGAATTCAGAATTCAGGGCCATGCAGATTCAGGAGTATTATCCTCGCTAGTTTGGCTGCTGGCTGCTGGAAAACTTGGCGTACATTGGCGTACACGACACTAAACACAT

Full Affymetrix probeset data:

Annotations for 1623140_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720