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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623171_s_at:

>probe:Drosophila_2:1623171_s_at:189:663; Interrogation_Position=1549; Antisense; TAAACAACGCTAGCAACCTGCCAAT
>probe:Drosophila_2:1623171_s_at:364:193; Interrogation_Position=1595; Antisense; AACTAATGCGGTGCCCAGGATCCAT
>probe:Drosophila_2:1623171_s_at:54:659; Interrogation_Position=1628; Antisense; TAAGCATCCCGCCACAGGAAAAGTG
>probe:Drosophila_2:1623171_s_at:649:85; Interrogation_Position=1649; Antisense; AGTGCACAGAAAATCCCCAAGGAGT
>probe:Drosophila_2:1623171_s_at:579:169; Interrogation_Position=1702; Antisense; AAAGGATACGCAGTTCTCGCTGCAG
>probe:Drosophila_2:1623171_s_at:309:219; Interrogation_Position=1729; Antisense; AAGTCCAGCGGCCTTGGATTAACTA
>probe:Drosophila_2:1623171_s_at:501:583; Interrogation_Position=1743; Antisense; TGGATTAACTAAACGCCCACTTAGG
>probe:Drosophila_2:1623171_s_at:289:435; Interrogation_Position=1771; Antisense; GAGGGATCTCCTTCTATGAGGCAAC
>probe:Drosophila_2:1623171_s_at:85:59; Interrogation_Position=1786; Antisense; ATGAGGCAACCAACACTTGCAGCAG
>probe:Drosophila_2:1623171_s_at:249:111; Interrogation_Position=1815; Antisense; AGCACCAGCAACGATTTGGATCCGG
>probe:Drosophila_2:1623171_s_at:654:729; Interrogation_Position=1830; Antisense; TTGGATCCGGATCCCCATATGGATA
>probe:Drosophila_2:1623171_s_at:316:283; Interrogation_Position=1886; Antisense; CTGCAACTTTATTTTCCCCTACTCA
>probe:Drosophila_2:1623171_s_at:622:157; Interrogation_Position=1928; Antisense; ACACACTCTCTTAAGCAACGTACTC
>probe:Drosophila_2:1623171_s_at:419:455; Interrogation_Position=1974; Antisense; GATACGAGATCAAAAGCCCCAAGAA

Paste this into a BLAST search page for me
TAAACAACGCTAGCAACCTGCCAATAACTAATGCGGTGCCCAGGATCCATTAAGCATCCCGCCACAGGAAAAGTGAGTGCACAGAAAATCCCCAAGGAGTAAAGGATACGCAGTTCTCGCTGCAGAAGTCCAGCGGCCTTGGATTAACTATGGATTAACTAAACGCCCACTTAGGGAGGGATCTCCTTCTATGAGGCAACATGAGGCAACCAACACTTGCAGCAGAGCACCAGCAACGATTTGGATCCGGTTGGATCCGGATCCCCATATGGATACTGCAACTTTATTTTCCCCTACTCAACACACTCTCTTAAGCAACGTACTCGATACGAGATCAAAAGCCCCAAGAA

Full Affymetrix probeset data:

Annotations for 1623171_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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