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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623173_at:

>probe:Drosophila_2:1623173_at:443:375; Interrogation_Position=1161; Antisense; GAAGAATTAGCTCCAACACCCAGAT
>probe:Drosophila_2:1623173_at:545:561; Interrogation_Position=1200; Antisense; GGAACTCCTACAAAGACCGTGCAAT
>probe:Drosophila_2:1623173_at:710:249; Interrogation_Position=1221; Antisense; CAATATGTGCGGTTGCGTGGCTTTC
>probe:Drosophila_2:1623173_at:478:701; Interrogation_Position=1258; Antisense; TTAGGTACCTGTTCTCGGGAAGTGA
>probe:Drosophila_2:1623173_at:430:351; Interrogation_Position=1329; Antisense; GAGGGAACCCGCCTTTTGTACATCT
>probe:Drosophila_2:1623173_at:156:491; Interrogation_Position=1346; Antisense; GTACATCTCCCACTTGATGATGGCA
>probe:Drosophila_2:1623173_at:200:445; Interrogation_Position=1361; Antisense; GATGATGGCAGACCTCCTAAGCGAG
>probe:Drosophila_2:1623173_at:103:53; Interrogation_Position=1396; Antisense; ATGAGAACCTTGTGGCCAGTTTGGA
>probe:Drosophila_2:1623173_at:240:455; Interrogation_Position=1446; Antisense; GATAATCCCCGGCAAAGCTGCATTA
>probe:Drosophila_2:1623173_at:642:119; Interrogation_Position=1461; Antisense; AGCTGCATTATCTGCGAGTCTGATA
>probe:Drosophila_2:1623173_at:117:473; Interrogation_Position=1490; Antisense; GTTCTATGCCAGGTACGAGCGACTT
>probe:Drosophila_2:1623173_at:446:417; Interrogation_Position=1506; Antisense; GAGCGACTTGCCAAGATTTCTCAAG
>probe:Drosophila_2:1623173_at:48:473; Interrogation_Position=1540; Antisense; GTTCAATCCCAGCTGAACCAAGCTA
>probe:Drosophila_2:1623173_at:538:191; Interrogation_Position=1630; Antisense; AACTTGCATTTGTATTTCCTCATCA

Paste this into a BLAST search page for me
GAAGAATTAGCTCCAACACCCAGATGGAACTCCTACAAAGACCGTGCAATCAATATGTGCGGTTGCGTGGCTTTCTTAGGTACCTGTTCTCGGGAAGTGAGAGGGAACCCGCCTTTTGTACATCTGTACATCTCCCACTTGATGATGGCAGATGATGGCAGACCTCCTAAGCGAGATGAGAACCTTGTGGCCAGTTTGGAGATAATCCCCGGCAAAGCTGCATTAAGCTGCATTATCTGCGAGTCTGATAGTTCTATGCCAGGTACGAGCGACTTGAGCGACTTGCCAAGATTTCTCAAGGTTCAATCCCAGCTGAACCAAGCTAAACTTGCATTTGTATTTCCTCATCA

Full Affymetrix probeset data:

Annotations for 1623173_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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