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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623206_a_at:

>probe:Drosophila_2:1623206_a_at:184:267; Interrogation_Position=2750; Antisense; CATGGGCTTCTTATGAAAGGCCAAA
>probe:Drosophila_2:1623206_a_at:627:579; Interrogation_Position=2768; Antisense; GGCCAAACTGTAAGGGATTCGAAGC
>probe:Drosophila_2:1623206_a_at:297:463; Interrogation_Position=2783; Antisense; GATTCGAAGCGGTTTTGAGTACAAA
>probe:Drosophila_2:1623206_a_at:107:697; Interrogation_Position=2923; Antisense; TTTATCATTTAACGCCAAGACTTTT
>probe:Drosophila_2:1623206_a_at:505:699; Interrogation_Position=2961; Antisense; TTTTAAACACCTAATCAACGATCGT
>probe:Drosophila_2:1623206_a_at:405:253; Interrogation_Position=2976; Antisense; CAACGATCGTAACAATTCTCGCACG
>probe:Drosophila_2:1623206_a_at:63:715; Interrogation_Position=2991; Antisense; TTCTCGCACGAAGTTGTTCAAGTGT
>probe:Drosophila_2:1623206_a_at:229:29; Interrogation_Position=3052; Antisense; ATACGTACGTATTTAGCACCCTAGA
>probe:Drosophila_2:1623206_a_at:277:31; Interrogation_Position=3087; Antisense; ATAACAGACCGATACGCATCCTGGC
>probe:Drosophila_2:1623206_a_at:214:293; Interrogation_Position=3096; Antisense; CGATACGCATCCTGGCTGGAGAAGC
>probe:Drosophila_2:1623206_a_at:511:377; Interrogation_Position=3116; Antisense; GAAGCGGAGCAAACACAACAAAAAT
>probe:Drosophila_2:1623206_a_at:520:717; Interrogation_Position=3196; Antisense; TTCGACAAAGCCGTAGTATTCAAAT
>probe:Drosophila_2:1623206_a_at:580:165; Interrogation_Position=3291; Antisense; AAATCCAACAGCAACGCACTCTATT
>probe:Drosophila_2:1623206_a_at:466:359; Interrogation_Position=3301; Antisense; GCAACGCACTCTATTAAAGCATAAG

Paste this into a BLAST search page for me
CATGGGCTTCTTATGAAAGGCCAAAGGCCAAACTGTAAGGGATTCGAAGCGATTCGAAGCGGTTTTGAGTACAAATTTATCATTTAACGCCAAGACTTTTTTTTAAACACCTAATCAACGATCGTCAACGATCGTAACAATTCTCGCACGTTCTCGCACGAAGTTGTTCAAGTGTATACGTACGTATTTAGCACCCTAGAATAACAGACCGATACGCATCCTGGCCGATACGCATCCTGGCTGGAGAAGCGAAGCGGAGCAAACACAACAAAAATTTCGACAAAGCCGTAGTATTCAAATAAATCCAACAGCAACGCACTCTATTGCAACGCACTCTATTAAAGCATAAG

Full Affymetrix probeset data:

Annotations for 1623206_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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