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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1623212_s_at:

>probe:Drosophila_2:1623212_s_at:723:25; Interrogation_Position=3578; Antisense; ATAGCCGTAACATAAGCGATTTCAA
>probe:Drosophila_2:1623212_s_at:499:707; Interrogation_Position=3694; Antisense; TTACGAGAACTCAGTGGCCGCCTGG
>probe:Drosophila_2:1623212_s_at:502:591; Interrogation_Position=3773; Antisense; TGTGACAGTTCCCAAAGCCATTTGT
>probe:Drosophila_2:1623212_s_at:710:59; Interrogation_Position=3805; Antisense; ATGTTACTATTGTTTCCTGTTGATG
>probe:Drosophila_2:1623212_s_at:172:613; Interrogation_Position=3828; Antisense; TGAAGCATCCCGCTAGAATCGAAAT
>probe:Drosophila_2:1623212_s_at:459:691; Interrogation_Position=3865; Antisense; TTTGTAAGCTATACCCACGTACCTC
>probe:Drosophila_2:1623212_s_at:677:291; Interrogation_Position=3882; Antisense; CGTACCTCTATTGCGCTATGTTGAA
>probe:Drosophila_2:1623212_s_at:326:481; Interrogation_Position=3916; Antisense; GTATTTTTTGTACACCTCTGTTGAC
>probe:Drosophila_2:1623212_s_at:513:279; Interrogation_Position=3931; Antisense; CTCTGTTGACGTTTCGAGTTCCAAA
>probe:Drosophila_2:1623212_s_at:229:175; Interrogation_Position=3953; Antisense; AAACGCCTTTCTCTATATGCCATGG
>probe:Drosophila_2:1623212_s_at:153:269; Interrogation_Position=3973; Antisense; CATGGCCAGCAGACCGCAGGAATAT
>probe:Drosophila_2:1623212_s_at:390:661; Interrogation_Position=4030; Antisense; TAAACCAAGGCCATTTCGGCACAAC
>probe:Drosophila_2:1623212_s_at:660:127; Interrogation_Position=4053; Antisense; ACCTTCGCTCAAACCATTTACATTA
>probe:Drosophila_2:1623212_s_at:666:113; Interrogation_Position=4118; Antisense; AGCAGCTCTTCCTAAAATCTCTAAC

Paste this into a BLAST search page for me
ATAGCCGTAACATAAGCGATTTCAATTACGAGAACTCAGTGGCCGCCTGGTGTGACAGTTCCCAAAGCCATTTGTATGTTACTATTGTTTCCTGTTGATGTGAAGCATCCCGCTAGAATCGAAATTTTGTAAGCTATACCCACGTACCTCCGTACCTCTATTGCGCTATGTTGAAGTATTTTTTGTACACCTCTGTTGACCTCTGTTGACGTTTCGAGTTCCAAAAAACGCCTTTCTCTATATGCCATGGCATGGCCAGCAGACCGCAGGAATATTAAACCAAGGCCATTTCGGCACAACACCTTCGCTCAAACCATTTACATTAAGCAGCTCTTCCTAAAATCTCTAAC

Full Affymetrix probeset data:

Annotations for 1623212_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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